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Only one of the two type VI secretion systems encoded in the Salmonella enterica serotype Dublin genome is involved in colonization of the avian and murine hosts
Veterinary Research volume 45, Article number: 2 (2014)
The type VI secretion system (T6SS) is a virulence factor for many Gram-negative bacteria. Salmonella genus harbors five phylogenetically distinct T6SS loci encoded in Salmonella Pathogenicity Islands (SPIs) SPI-6, SPI-19, SPI-20, SPI-21 and SPI-22, which are differentially distributed among serotypes. The T6SSs encoded in SPI-6 and SPI-19 contribute to pathogenesis of serotypes Typhimurium and Gallinarum in mice and chickens, respectively. Salmonella Dublin is a pathogen restricted to cattle where it causes a systemic disease. Also, it can colonize other hosts such as chickens and mice, which can act as reservoirs of this serotype. Salmonella Dublin harbors the genes for both T6SSSPI-6 and T6SSSPI-19. This study has determined the contribution of T6SSSPI-6 and T6SSSPI-19 to host-colonization by Salmonella Dublin using avian and murine models of infection. Competitive index experiments showed that, a mutant strain lacking both T6SSs (∆T6SSSPI-6/∆T6SSSPI-19) presents a strong colonization defect in cecum of chickens, similar to the defect observed for the ∆T6SSSPI-6 mutant, suggesting that this serotype requires a functional T6SSSPI-6 for efficient colonization of the avian gastrointestinal tract. Colonization of mice was also defective, although to a lesser extent than in chickens. In contrast, the T6SSSPI-19 was not necessary for colonization of either chickens or mice. Transfer of T6SSSPI-6, but not T6SSSPI-19, restored the ability of the double mutant to colonize both animal hosts. Our data indicate that Salmonella Dublin requires only the T6SSSPI-6 for efficient colonization of mice and chickens, and that the T6SSSPI-6 and T6SSSPI-19 are not functionally redundant.
The genus Salmonella contains over 2500 serotypes distributed in two species, S. enterica and S. bongori. Depending on the serotype and the immune status of the infected host, Salmonella can produce a wide spectrum of clinical signs ranging from self-limiting diarrhea to systemic illness. Some serotypes are able to infect a wide range of hosts, while others can infect only one animal species . Salmonella enterica serotype Dublin (Salmonella Dublin) infection is restricted to cattle, where it causes a serious systemic disease characterized by pneumonia, arthritis, osteomielytis, meningoencephalitis, enteritis and, in some cases, abortion, leading to economic losses in animal industry [3–7]. Salmonella Dublin can also infect humans via consumption of raw milk from infected cattle, constituting an important threat to public health [8–10]. In addition, some studies have reported the isolation of Salmonella Dublin from chickens and wild mice, suggesting that these animal hosts can act as environmental reservoirs of Salmonella Dublin. In one report, Salmonella Dublin was isolated from feces of wild mice in a farm with high prevalence of this pathogen in cattle, suggesting that rodents may act as reservoirs and eventually contribute to Salmonella Dublin transmission to susceptible cows . Chickens may also act as reservoirs for this serotype, as Salmonella Dublin is able to colonize chickens without clinical symptoms, contributing to transmission of salmonellosis to cattle and humans .
The type VI secretion system (T6SS) represents a new paradigm of protein secretion and is a key virulence factor for many important pathogenic bacteria contributing to different processes ranging from inter-bacterial killing to pathogenesis [13–17]. The genus Salmonella contains five phylogenetically distinct T6SS loci encoded in differentially distributed Salmonella Pathogenicity Islands (SPIs) (i.e. SPI-6, SPI-19, SPI-20, SPI-21 and SPI-22) [18, 19]. Some serotypes contain a unique T6SS, while others have two different T6SS loci encoded in their genomes. Whether the presence of multiple T6SSs corresponds to differential functional specialization of each system, or if they are redundant in their function is currently unknown. Interestingly, the genome of Salmonella Dublin includes two T6SSs encoded in SPI-6 and SPI-19, respectively.
Recent reports have linked these T6SSs to Salmonella virulence and colonization. The T6SS encoded in SPI-6 (T6SSSPI-6) is required by Salmonella Typhimurium for intracellular survival in avian and murine macrophages and for gastrointestinal colonization and systemic spread in orally-infected White Leghorn chicks and BALB/c mice [20–22]. In addition, transposon insertions in genes encoding essential components of T6SSSPI-6 in Salmonella Typhi produced an attenuated phenotype in a novel humanized mice model of infection . On the other hand, the T6SS encoded in SPI-19 (T6SSSPI-19) contributes to the intracellular survival of Salmonella Gallinarum in avian macrophages , and to the gastrointestinal and systemic colonization of infected chicks by this serotype . These findings have supported the notion that T6SSs could be functionally redundant despite distinct phylogenetic origins [21, 25]. In this context, Salmonella Dublin constitutes a suitable model to study the contribution of two differentially-encoded T6SSs to host-adaptation and pathogenesis of Salmonella.
We evaluated the contribution of T6SSSPI-6 and T6SSSPI-19 to the colonization of the gastrointestinal tract and deeper tissues by Salmonella Dublin using avian and murine models of infection. A strain of Salmonella Dublin lacking both T6SSSPI-6 and T6SSSPI-19 displayed a strong colonization defect of the cecum, liver and spleen in competitive infections in both animal models. Furthermore, we observed a similar phenotype in a strain that lacks only the T6SSSPI-6. Interestingly, this colonization defect could be reversed by transfer of a complete T6SSSPI-6, but not by transfer of the T6SSSPI-19. These results suggest that T6SSSPI-6 and T6SSSPI-19 are not functionally redundant in Salmonella Dublin, and that only T6SSSPI-6 is required for host colonization by this serotype.
Material and methods
Bacterial strains and growth conditions
The bacterial strains used in this study are listed in Table 1. Bacteria were routinely grown in Luria-Bertani (LB) broth (10 g/L tryptone, 5 g/L yeast extract, 5 g/L NaCl) at 37 °C with aeration. LB broth was supplemented with ampicillin (Amp; 100 μg/mL), kanamycin (Kan; 50 μg/mL), chloramphenicol (Cam; 20 μg/mL), trimethoprim (Tp; 100 μg/mL), or spectinomycin (Sp; 250 μg/mL) as needed. LB plates were solidified by the addition of agar (15 g/L) to LB broth.
DNA procedures and PCR amplifications
DNA manipulations were performed using standard protocols. Plasmid DNA was isolated using the “QIAprep Spin Miniprep Kit” (QIAGEN, MD, USA). Genomic DNA was isolated using the “GenElute Bacterial Genomic DNA” kit (Sigma-Aldrich, MO, USA). PCR products were purified using the “QIAquick PCR Purification Kit” (QIAGEN, MD, USA). Ligations were performed using T4 DNA ligase (NEB, MA, USA) as recommended by the manufacturer. DNA samples were analyzed by electrophoresis in 1% agarose gels and were visualized under UV light after RedGel (Biotium, CA, USA) staining.
Primers were designed using the “Vector NTI Advance 10.0” software (Invitrogen, CA, USA) and are listed in Table 2. PCR products were amplified in a “MultiGene TC9600-G” thermal cycler (LabNet, NJ, USA). PCR reaction mixes contained 1X buffer, 2 mM MgCl2, 100 nM dNTPs, 100 nM of each primer, 100 ng of template DNA and 0.5 to 1 U of HiFi DNA pol (KAPA, MA, USA). Standard conditions for amplification were: 2 min at 95 °C, followed by 30–35 cycles of 94 °C for 45 s, 55 °C for 30 s and 72 °C for a suitable time (1 min/kb) according to DNA polymerase processivity, and a final extension step at 72 °C for 5 min.
Construction of Salmonella Dublin mutant strains
Mutant strains of Salmonella Dublin with deletions in the T6SS clusters encoded in SPI-6 (SeD_A0289 to SeD_A0326) and SPI-19 (SeD_A1212 to SeD_A1243) or in the phoN gene (SeD_A4714) were constructed using the Lambda Red recombination method with modifications [26, 27]. The oligonucleotides used for mutagenesis were designed with 40 bases on the 5′ends identical to the ends of the corresponding deletion (Table 2) and 20 bases on the 3′ends that anneal with the 5′or 3′ end of a Cam or Kan resistance cassette flanked by FRT sites (Flp recombinase target sequence) present in plasmids pCLF2 (GenBank accession number HM047089) and pCLF4 (GenBank accession number EU629214.1), respectively. These plasmids were used as templates for the corresponding amplification of PCR products. Salmonella Dublin strain CT_02021853 containing the plasmid pKD46, which encodes the Lambda Red recombination system, was grown to an OD600 of 0.6 at 30 °C in LB broth supplemented with Amp and L-arabinose (10 mM). Then, bacteria were made electrocompetent and transformed by electroporation with 300 to 600 ng of each PCR product. Transformants were selected on LB agar plates supplemented with the corresponding antibiotic at 37 °C. The presence of each mutation was confirmed by PCR amplification and transferred to the wild-type background by generalized transduction using the high-frequency transducing phage P22 HT105/1 int-201.
Cloning of Salmonella Dublin T6SSSPI-6 cluster
Cloning of a ~40 Kb fragment encoding the T6SSSPI-6 gene cluster from Salmonella Dublin CT_02021853 onto plasmid R995 was done by the VEX-Capture system for the targeted excision and cloning of large DNA fragments . In first place, loxP sites were introduced at each side of the targeted genomic region by homologous recombination of PCR products by the Lambda-Red system, using as templates the plasmids pVEX1212 and pVEX2212 that encode Sp and Cam resistance cassettes, respectively. The correct insertion of loxP sites was confirmed by PCR using primers SPI-6_OUT5 and STM0266_VEX_H2_U2 for loxP insertion located in the upstream region of the T6SS cluster, and primers SPI-6_OUT_DOWN and STM0298_VEX_H2_D2 for the downstream loxP insertion. T6SSSPI-6 cluster was excised from the chromosome as a non-replicating circular DNA molecule by specific recombination of loxP sites mediated by the action of Cre recombinase encoded in plasmid pEKA30. A 1,209 bp internal region of SPI-6 was amplified using primers SD_VC_OUT5 and SD_VC_OUT3, both of which include an Xba I restriction site at the 5′ end. The PCR product was cloned into the unique Xba I site in R995 to generate R995-VC6 (Table 2). The T6SSSPI-6 intermediate was then captured into the R995-VC6 vector by a homologous recombination event, producing the R995 + SPI-6 plasmid.
Plasmid R995 + SPI-6 was transferred to E. coli strain EC100D pir-116 by conjugation and the presence and structural integrity of the T6SSSPI-6 gene cluster cloned onto R995 was verified by visualization of supercoiled plasmid DNA in agarose gel and by tiling-PCR analysis which amplify ten fragments that cover the entire T6SS region. E. coli strains EC100D pir-116/ R995 + SPI-6 and R995 + SPI-19 were used as donors for transfer of the captured SPI-6 and SPI-19 to the Salmonella Dublin ∆T6SSSPI-6/∆T6SSSPI-19 strain by conjugation.
For competitive infections in chickens and mice, the in vivo stability of plasmids R995 and R995 + SPI-6 was assessed in each organ at each time point studied. No differences were observed on colony forming units (CFU) indicating that R995 and its derivatives are highly stable in vivo.
All animal experiments conducted in this study were approved by the Texas A&M University Institutional Animal Care and Use Committee (TAMU AUP# 2010–38) and were carried out in accordance with the Guide to the Care and Use of Laboratory Animals, the Public Health Service Policy on the Human Care and Use of Laboratory Animals.
For competitive infections in the avian model, fifteen 4-day-old unsexed White Leghorn chicks were orally inoculated with 109 CFU of an equal mixture of the strains to be tested in a volume of 100 μL of sterile PBS. The exact titer and ratio of strains in the inoculum were determined by serial dilution and plating on LB agar supplemented with the corresponding antibiotics. Five birds from the infected group were sacrificed by asphyxiation with CO2 on days 1, 3 and 9 post-infection. Cecum (with contents), liver and spleen were collected and homogenized in sterile PBS. Then, serial ten-fold dilutions were spread on LB agar plates containing the appropriate antibiotics for determination of CFU.
For competitive infections in the murine model, groups of five six- to eight-week-old female BALB/c mice were inoculated with 106 CFU of an equal mixture of the strains to be tested in a volume of 100 μL sterile PBS. The exact titer and ratio of strains in the inoculum were determined as described above. Four days post-infection, mice were sacrificed and cecum, liver and spleen were collected and homogenized. The number of Salmonellae present in each organ were enumerated as described above. In both animal models, the Salmonella Dublin ∆phoN mutant was used as wild-type strain. Inactivation of phoN, encoding alkaline phosphatase, abolishes the ability to cleave 5-bromo-4-chloro-3-indolyl phosphate (XP), but does not reduce the ability of Salmonella to colonize chicken and mice [21, 29]. Growth on Luria–Bertani (LB) agar plates supplemented with XP provided an easy means to distinguish between the wild-type strain (PhoN-, white colonies) and T6SS mutant strains (PhoN+, blue colonies) in competitive infection experiments.
CFU obtained from competitive experiments were used for data analysis as a mean ratio of logarithmically converted CFU of mutant to wild type, normalized to the input ratio. Error bars indicate standard error. A parametric test (Student’s t-test) was used to determine whether differences between treatment groups were statistically significant (P < 0.05).
Role of the T6SSs encoded in SPI-6 and SPI-19 to Salmonella Dublin colonization of mice
Salmonella Dublin contains two phylogenetically distinct T6SSs (T6SSSPI-6 and T6SSSPI-19), that have been individually linked to virulence in other Salmonella serotypes [20, 22–25]. To determine if either one or both T6SSs contribute to colonization of the murine host by Salmonella Dublin, we first performed competitive infections between a mutant carrying deletions of both T6SSSPI-6 and T6SSSPI-19 gene clusters (∆T6SSSPI-6/∆T6SSSPI-19) and the wild-type strain of Salmonella Dublin.
As shown in Figure 1, the ∆T6SSSPI-6/∆T6SSSPI-19 double mutant showed a statistically significant colonization defect in each organ tested. To determine the individual contribution of each T6SS to this phenotype, competitive infections were performed between the wild-type strain and the corresponding single ∆T6SSSPI-6 and ∆T6SSSPI-19 mutant. As observed in Figure 1, only the ∆T6SSSPI-6 mutant strain was attenuated, displaying a colonization defect very similar to the ∆T6SSSPI-6/∆T6SSSPI-19 double mutant. In contrast, the ∆T6SSSPI-19 mutant reached the same levels of colonization as the wild type strain in all organs analyzed, suggesting that only T6SSSPI-6 is involved in mice colonization.
To verify that only T6SSSPI-6 is responsible for the colonization defect observed during mice infection, the double mutant was complemented in trans with either T6SSSPI-6 (R995 + SPI-6) or T6SSSPI-19 (R995 + SPI-19) and competition experiments were performed. As shown in Figure 2, transfer of T6SSSPI-6 restored the ability of the ∆T6SSSPI-6/∆T6SSSPI-19 double mutant to colonize the cecum. However, complementation was not achieved in the liver and spleen (Figure 2). Interestingly, transfer of T6SSSPI-19 did not restore the colonization defect of the ∆T6SSSPI-6/∆T6SSSPI-19 mutant strain in all organs, indicating that only T6SSSPI-6 is involved in colonization of mice by Salmonella Dublin.
Contribution of the T6SSs encoded in SPI-6 and SPI-19 to Salmonella Dublin colonization of the avian host
To determine the contribution of T6SSSPI-6 and T6SSSPI-19 to colonization of chicks by Salmonella Dublin, competitive infections were performed between the (∆T6SSSPI-6/∆T6SSSPI-19) mutant and the wild-type strain. As shown in Figure 3, the ∆T6SSSPI-6/∆T6SSSPI-19 double mutant was defective for both intestinal and systemic colonization early after infection (days 1 and 3 post-infection). The colonization defect was most severe by day 9 post-infection in all organs, especially in the cecum. In contrast to the results obtained in the murine model, this mutant showed a very strong colonization defect in cecum, while only a mild phenotype was observed in the liver and spleen, indicating a critical role for the T6SSs to gastrointestinal colonization of the chicken by Salmonella Dublin.
Competitive index experiments performed at day 9 post-infection showed that a T6SSSPI-6 mutant strain was defective for chicken colonization to the same extent as the ∆T6SSSPI-6/∆T6SSSPI-19 double mutant strain, suggesting that the T6SS encoded in SPI-6 is crucial for an efficient colonization of the avian host (Figure 4).
To verify that T6SSSPI-6 was responsible for the phenotypes observed during chicken infection, the ∆T6SSSPI-6/∆T6SSSPI-19 deletion mutant was complemented in trans with either T6SSSPI-6 (R995 + SPI-6) or T6SSSPI-19 (R995 + SPI-19) and competition experiments were performed at day 9 post-infection. As shown in Figure 5, transfer of T6SSSPI-6, but not T6SSSPI-19, complemented the colonization defect of the ∆T6SSSPI-6/∆T6SSSPI-19 double mutant in each organ tested, indicating that T6SSSPI-6 was responsible for the colonization defect of the double mutant strain. Altogether our data shows that only the T6SSSPI-6 contributes to colonization of the murine and avian host.
The presence of multiple T6SSs has been reported in several bacterial species suggesting functional adaptation of each T6SS to a specific niche and/or host. For example, of the five T6SS (T6SS-1 to T6SS-5) of Burkholderia thailandesis, T6SS-5 is important for virulence while T6SS-1 participates in killing of susceptible target bacteria . This is also the case for Pseudomonas aeruginosa, which encodes three T6SS loci (HSI-I to HSI-III).HSI-I mediates inter-bacterial relationships , while HSI-II and HSI-III are required for virulence towards animals and plants .
Salmonella Dublin encodes two T6SSs (T6SSSPI-6 and T6SSSPI-19) that have been individually linked to virulence and pathogenesis in other Salmonella serotypes. Notably, while most Salmonella serotypes seem to have lost the T6SSSPI-6 locus after acquisition of SPI-19, Salmonella Dublin has retained both T6SSs. Whether the presence of these two T6SS corresponds to differential functional specialization of each system or whether they are redundant in their function, is currently unknown.
In this study we performed competitive infection experiments to determine the contribution of both T6SS to colonization of chickens and mice by Salmonella Dublin, and to gain insights into the potential functional adaptation of T6SSSPI-6 and T6SSSPI-19 to either animal host. We chose the murine and avian models of infection because it has been reported that Salmonella Dublin asymptomatically colonizes mice and chickens, suggesting that these animals can act as reservoirs and vectors for Salmonella Dublin infection in cattle and humans [11, 12] and because previous studies have individually linked the T6SSSPI-6 and T6SSSPI-19 of other serotypes to the ability of Salmonella to colonize the murine and avian host.
Competitive index data from oral infection of White Leghorn chicks and BALB/c mice showed that a mutant strain lacking both T6SSSPI-6 and T6SSSPI-19 was not able to colonize the cecum, liver and spleen as efficiently as the wild-type strain in both animal models. Interestingly, even though the double mutant was attenuated in chickens and mice, the degree of attenuation was different depending on the infected animal host. Thus, while the double mutant strain was only slightly attenuated in all organs in mice (log competitive index of -0.5), it was severely attenuated in the chicken, displaying a log competitive index of -3.72 in the cecum and of ~ -1.5 in the liver and spleen. Interestingly, a similar phenotype was observed for a single T6SSSPI-6 mutant strain in both models of infection.
The strong colonization defect observed in the cecum of infected chicks was not unexpected, as previous studies performed in Salmonella Typhimurium have shown that T6SSSPI-6 is required for efficient colonization of the cecum of infected chicks . In agreement with this, our complementation experiments demonstrated that T6SSSPI-6 was responsible for these phenotypes, as transfer of the captured T6SSSPI-6 gene cluster, but not of the T6SSSPI-19 gene cluster, restored the ability of the double mutant to colonize the gastrointestinal tract and internal organs of infected chickens and mice.
Our data strongly suggests that Salmonella Dublin requires a functional T6SSSPI-6 for efficient colonization and persistence in the avian gastrointestinal tract and that T6SSSPI-19 is not involved in this process. These differences support the notion that T6SSSPI-6 and T6SSSPI-19 are not functionally redundant. The fact that T6SSSPI-19 is important for colonization of the avian host by Salmonella Gallinarum , but not by Salmonella Dublin suggests that the contribution and impact of the T6SSs to Salmonella pathogenesis depend on the serotype and the infected host.
The wide distribution of the T6SSSPI-6 among Salmonella enterica serotypes  and the fact that this T6SS has been shown to be required for host-colonization in each serotype tested [20–23] suggests that this T6SS is part of the common virulence gene pool of Salmonella enterica. This would not be the case for the T6SSSPI-19 which has a much limited distribution and, as shown by this study, is not important for host-colonization in all serotypes.
The mechanisms behind the contribution of the T6SSSPI-6 to Salmonella Dublin virulence remain obscure. Previous reports have shown that, in Salmonella Typhimurium and Salmonella Typhi, the T6SSSPI-6 contributes to Salmonella survival within murine and avian macrophages [20, 22], nevertheless we could not detect a significant contribution of the T6SSSPI-6 of Salmonella Dublin to these processes (data not shown, Bernardo Pinto MSc. Thesis).
The question of why Salmonella Dublin has retained both T6SSs is still unanswered. Nevertheless, we cannot rule out that T6SSSPI-19 may contribute to Salmonella fitness in other natural settings, such as the environment, or to colonization of other animals such as cattle, which is the natural host for Salmonella Dublin. It is possible that T6SSSPI-19 might play a role in the course of systemic diseases such as typhoid caused by Salmonella Dublin and Salmonella Gallinarum in cattle and chickens, respectively. Further studies will have to be conducted to evaluate the contribution of both T6SSSPI-6 and T6SSSPI-19 to the ability of Salmonella Dublin to colonize cattle.
Altogether, our data shows that T6SSSPI-6 contributes to chicken and mice colonization by Salmonella Dublin and that T6SSSPI-19 is not involved in these processes. The ancestral acquisition of the T6SSSPI-6 locus, its wide distribution among S. enterica serotypes and its contribution to virulence in Salmonella Dublin, Salmonella Typhimurium and Salmonella Typhi suggest that this T6SS belongs to the common tool-box used by S. enterica to infect and colonize a wide variety of animal hosts.
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This work was supported by grant 1100092 from Fondo Nacional de Desarrollo Científico y Tecnológico (FONDECYT), Chile. CJB was supported by Postdoctoral Fellowship 3120175 from FONDECYT. David Pezoa was supported by fellowships from FULBRIGHT, CONICYT (N°21090041, AT-24121297, 75110062 BCH-3), CAS was supported by grant 1110172 from FONDECYT. HAP was supported by grants NIH/NIAID R01AI083646, R56AI077645, R21AI083964 and USDA 2009–03579. We thank James W. Wilson for generous gift of bacterial strains and plasmids required for the VEX-Capture technique, and Lydia Bogomolnaya, Francisco Ipinza and Marissa Talamantes for technical assistance.
The authors declare that they have no competing interests.
Conceived and designed the experiments: DP, CJB, HAP, CAS, IC. Performed the experiments: DP, HJY, CJB. Analyzed the data: DP, CJB, CAS, HAP, IC. Contributed reagents/materials/analysis tools: HAP, CAS, IC. Wrote the paper: DP, CJB, HAP, CAS, IC. All authors read and approved the final manuscript.
David Pezoa, Carlos J Blondel contributed equally to this work.
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Pezoa, D., Blondel, C.J., Silva, C.A. et al. Only one of the two type VI secretion systems encoded in the Salmonella enterica serotype Dublin genome is involved in colonization of the avian and murine hosts. Vet Res 45, 2 (2014). https://doi.org/10.1186/1297-9716-45-2
- loxP Site
- Avian Host
- Double Mutant Strain
- T6SS Locus
- Competitive Index