- Open Access
Differential modulation of host genes in the kidney of brown trout Salmo trutta during sporogenesis of Tetracapsuloides bryosalmonae (Myxozoa)
© Kumar et al.; licensee BioMed Central Ltd. 2014
Received: 13 June 2014
Accepted: 24 September 2014
Published: 4 October 2014
Tetracapsuloides bryosalmonae (Myxozoa) is the causative agent of proliferative kidney disease in various species of salmonids in Europe and North America. In Europe, spores of T. bryosalmonae develop in the kidney of infected brown trout Salmo trutta and are released via urine to infect the freshwater bryozoan Fredericella sultana. The transcriptomes of kidneys of infected and non-infected brown trout were compared by suppressive subtractive hybridization. Differential screening and a subsequent NCBI BLAST analysis of expressed sequence tags revealed 21 transcripts with functions that included cell stress and cell growth, ribonucleoprotein, signal transduction, ion transporter, immune response, hemoglobin and calcium metabolisms. Quantitative real time PCR was used to verify the presence of these selected transcripts in brown trout kidney at sporogonic stages of T. bryosalmonae development. Expression of cold-inducible RNA-binding protein, cyclin-dependent kinase inhibitor 2A, prothymosin alpha, transforming protein RhoA, immunoglobulin light chain and major histocompatibility complex class I were up-regulated significantly in infected brown trout. Expression of both the hemoglobin subunit beta and stanniocalcin precursor were down-regulated significantly in infected brown trout. This study suggests that cell stress and cell growth processes, signal transduction activities, erythropoiesis and calcium homeostasis of the host are modulated during sporogonic stages of parasite development, which may support the sporogenesis of T. bryosalmonae in the kidney of brown trout.
Tetracapsuloides bryosalmonae belongs to the metazoan phylum Myxozoa (class: Malacosporea) and causes proliferative kidney disease (PKD) in various species of salmonids -. This parasite is found in Europe and North America and can lead to severe losses in rainbow trout Oncorhynchus mykiss and brown trout Salmo trutta farms  and the associated economic impacts of this disease make it an important factor for aquaculture . Additionally, PKD is suspected of contributing to population declines of wild brown trout and other salmonids ,.
Fish species most affected by T. bryosalmonae belong to the genera Salmo, Oncorhynchus and Salvelinus,. Other susceptible hosts include grayling Thymallus thymallus and the non-salmonid Northern Pike Esox lucius in which extrasporogonic stages similar to those of T. bryosalmonae have been found ,. Only brown trout and brook trout Salvelinus fontinalis can transmit the parasite back to its obligate invertebrate host, bryozoans ,. Sporogonic stages of T. bryosalmonae were seen in the renal tubules of brown trout infected with the European strain of T. bryosalmonae at different time points that could transmit the parasite to bryozoan colonies . Furthermore, we verified the persistence of T. bryosalmonae in chronically infected brown trout and their ability to infect the bryozoan up to 104 weeks post exposure (wpe) .
Suppression subtractive hybridization (SSH) can identify transcripts that are differentially either up- or down-regulated in two RNA samples . SSH was used to identify differential expression of immune relevant genes in resistant and susceptible strains of Atlantic salmon Salmo salar infected with the monogenean Gyrodactylus salaris. In myxozoan parasite research, SSH has been used to study activated and inactivated spores of Myxobolus cerebralis, and to identify differentially up- or down-regulated genes in the head kidney and intestine of susceptible and resistant gilthead sea bream Sparus aurata infected with Enteromyxum leei. To date, nothing is known about differentially up- or down-regulated transcripts in response to the development of T. bryosalmonae in the kidney of the brown trout host. In this study, we compared the transcriptomes of kidneys of infected and non-infected brown trout by suppressive subtractive hybridization. We discovered transcripts differentially expressed in the kidneys of brown trout during sporogonic stages of parasite development. Additionally, we quantified relative expression of the target transcripts in the kidney samples of brown trout. These gene expression data demonstrate the differential modulation of host genes during sporogonic stages of T. bryosalmonae and help improve our understanding of renal cell mechanisms and regulations.
Materials and methods
This study was approved by the institutional ethics committee of the University of Veterinary Medicine Vienna and the national authority, according to §26 of the Austrian Law for Animal Experiments, Tierversuchsgesetz 2012 under approval number GZ 68.205/0247-II/3b/2011.
Experimental design and fish sampling
Prior to the experiment, certified specific pathogen-free (SPF) brown trout stock was sampled randomly and tested by quantitative real time PCR (qPCR) to confirm the absence of T. bryosalmonae according to Grabner and El-Matbouli . Prior to infection, SPF 60 brown trout (mean length 5.5 ± 0.5 cm, mean weight 2.3 ± 0.5 gm) were transferred to a small aquarium filled with 25 liters volume of water and the water supply was stopped for 24 h. Free T. bryosalmonae spores in suspension, released from 12 mature sacs of parasite from laboratory infected Fredericella sultana colonies, were added to the aquarium, which was then maintained with vigorous aeration for 24 h at 16.5 ± 1 °C. After infection, fish were distributed between 3 aquaria, 20 fish per aquarium filled with 100 liters volume of water. Additional 30 brown trout were held as a non-infected control in separate aquaria. Fish were maintained at 16.5 ± 1 °C with 3 liters per minute running water flow rate and fed everyday with 1% of the body weight. No mortalities of fish occurred during initial exposure, and only 3 fish died between 11 and 12 wpe. Posterior kidneys were sampled from both infected (n = 10 fish) and control groups (n = 5 fish) at 6, 8, 10 and 12 wpe and the rest of the fish at 14 and 17 wpe. Tissue from each fish was divided into 2 portions, 1 fixed in 10% neutral buffered formalin for histology, and 1 in RNAlater (Sigma, Steinheim, Germany) for gene expression study.
Suppression subtractive hybridization
Two micrograms of mRNA were reverse transcribed into first-strand cDNA using SMARTScribe reverse transcriptase, then into second-strand cDNA by a second-strand enzyme cocktail (Clontech, Saint-Germain-en-Laye, France). PCR was used to assess the relative amount of cDNA products after double strand (ds) cDNA synthesis, using trout beta-actin gene primers .
The cDNA pools of infected and non-infected control brown trout were hybridized in 2 steps. A PCR-Select cDNA subtraction kit (Clontech) was used for SSH. Forward, reverse and control hybridizations were performed to create subtracted cDNA per manufacturer guidelines. The forward subtraction, infected brown trout cDNA was used as the Tester and non-infected control brown trout cDNA as the Driver. For the reverse subtraction, non-infected control brown trout cDNA was used as the Tester and infected brown trout cDNA as the Driver. The ds cDNA was digested with RsaI restriction enzyme and purified. Ligation, hybridization, and primary and secondary PCR were performed according to the manufacturer’s protocols. Finally, subtraction efficiency was evaluated to confirm the reduced abundance of SSH libraries using PCR with trout beta-actin gene primers. Subtracted secondary PCR products were cloned into a pCR4 TOPO TA cloning vector (Invitrogen, Carlsbad, USA) and transformed into Escherichia coli TOP10 cells to create the forward and reverse subtracted cDNA libraries. All clones were picked and tested by colony PCR using adaptor-specific nested PCR primer 1 and nested PCR primer 2R in a Clontech kit. PCR was performed as follows: 30°Cycles of 94 °C for 45 s, 66 °C for 45 s and 72 °C for 90 s.
Differential expression screening of clones
To validate and explore patterns of gene expression, differential expression screening was performed with a dot blot of PCR products from both populations, which represented differentially expressed transcripts.
For the dot blot, the DIG-High Prime DNA Labeling and Detection Starter Kit I (Roche Applied Science, Mannheim, Germany) was used. The cDNA population of subtracted forward, subtracted reverse, unsubtracted tester control and unsubtracted driver control were labeled with DIG-digoxigenin, and used as probes for the dot blot hybridization. Analysis of the DIG labeling efficiency was performed as per the manufacturer’s instructions. To denature the DNA, a final concentration of 0.4 M NaOH/10 mM EDTA was added to each of the SSH library clones amplified by the adaptor-specific PCR primers (1 and 2R), incubated at 99 °C for 10 min, then held on ice. Two microliters of each denatured PCR product was dotted onto a positively charged nylon membrane and UV cross-linked. Membranes were prehybridized in DIG Easy Hyb and then hybridized overnight at 42 °C with each of the constructed DIG-labelled cDNA probes. Hybridization and subsequent detection was performed using anti-DIG-alkaline-phosphatase conjugate and BCIP/NBT substrate following the manufacturer’s protocol. Differential expression of enriched subtracted forward and reverse cDNA libraries were analyzed and compared with unsubtracted cDNA library controls. Positive dots of subtracted forward and reverse cDNA libraries were identified as those that had different signal intensities on the probed membrane. Dots with similar intensities and weak signals were considered to be non-differentially expressed transcripts.
A plasmid from each positive clone of subtracting forward and reverse cDNA libraries was purified, then sequenced at LGC Genomics GmbH, Berlin, Germany. Vector and adaptor-sequences were removed from the expressed sequence tags (EST). The basic local alignment search tool (BLAST) searches were performed to identify the expressed sequence tags (EST) in the NCBI non-redundant sequence database using BLASTn and BLASTx . Biological and molecular functions of transcripts were putatively identified through searches against the Gene Ontology , and UniProt databases .
Quantitative real-time PCR
Infection in individual kidneys collected at different time points were first confirmed by immuno-histology and qPCR of T. bryosalmonae. Parasite load was low in kidneys at 6 wpe and high at 8–12 wpe; the details were published in our previous study . Total RNA was extracted from the kidney samples using an RNeasy Mini Kit (Qiagen) according to the manufacturer’s instructions, and included an on-column DNase digestion step. cDNA was synthesized using an iScript cDNA Synthesis Kit (BIO-RAD, Hercules, USA) with 1000 ng total RNA per the user’s manual. Nine important transcripts were selected based on their functions such as cell and growth stress, signal transduction activity, protein synthesis, immune gene, heme binding protein and calcium homeostasis to verify the transcriptional level in infected brown trout at pre-sporogonic (6 wpe) and sporogonic stages (8, 10 and 12 wpe) of parasite development and non-infected control brown trout.
Nucleotide sequence of quantitative real-time PCR primers used in this study
Annealing temperature (°C)
Amplicon size (bp)
GeneBank accession no.
TP RhoA F
TP RhoA R
Relative expression levels of target transcripts were analyzed at each time point using a linear mixed effect model. Adjustment for multiple comparisons was performed using SIDAK’s procedure . The differences between groups (infected and controls) at each single time point were analyzed using t-tests for independent samples with Bonferroni α-correction. Correlations between relative expression levels of target transcripts were analyzed by calculating the Pearson product–moment correlation coefficient. For all statistical tests, a p-value < 0.05 was regarded as significant. All statistical analyses were conducted with SPSS version-20 software.
Identification of EST from the SSH library
cDNA sequences of the transcripts revealed from the forward subtracted library
GeneBank accession no.
Nucleotide identity (%)
Cold-inducible RNA-binding protein
CDKN2AIP N-terminal-like protein
Cell growth regulation
Integral membrane protein 2B
Membrane protein/beta-amyloid binding
Ribosomal protein L6
26S protease regulatory subunit S10B
Elongation factor 2
Ferritin, middle subunit
Cellular iron ion homeostasis
NADH dehydrogenase 1 beta subcomplex subunit 6
Mitochondrial membrane respiratory chain
Cytochrome oxidase subunit 1
Rab GDP dissociation inhibitor beta
Protein transport/signal transduction
Transforming protein RhoA
GTPase mediated signal transduction
Gamma-secretase subunit PEN-2
Gamma-secretase complex/notch signaling pathway/amyloid precursor protein
Immunoglobulin light chain precursor
Humoral immune response
Ig kappa chain V region
Humoral immune response
IgM heavy chain 7.3
Humoral immune response
MHC class I
Antigen processing and presentation/immune response
cDNA sequences of the transcripts revealed from the reverse subtracted library
GeneBank Accession no.
Nucleotide identity (%)
Hemoglobin subunit beta
Heme binding/oxygen transport
Calcium homeostasis/hormone activity
Carbonic anhydrase 1
Carbon metabolic/zinc ion binding
Tubulin alpha-1A chain
Comparisons of relative transcript expression levels
Humoral immune response and antigen presentation genes were expressed differentially in the kidney of brown trout during development of the parasite. The expression of immunoglobulin light chain (IgL) exhibited a significant positive correlation (r = 0.647; p < 0.008) with major histocompatibility complex class I (MHC-I). Expression of IgL was up-regulated highly significantly (p < 0.0001 or p < 0.038) in infected brown trout at all time points (Figure 3B). Expression of MHC-I was up-regulated significantly (p < 0.002 or p < 0.024) in infected brown trout at 6–10 wpe but it was not at 12 wpe (p = 0.223) (Figure 3C).
Previous studies have examined cellular responses and immune genes in the kidney of rainbow trout naturally infected with the European strain of T. bryosalmonae- but nothing is known about the brown trout. The parasite spores develop in the kidney tubules of infected brown trout and are released via urine to infect bryozoan Fredericella sultana-. To date, nothing is known about host transcript regulation during the development of sporogonic stages of T. bryosalmonae. Herein we report the first gene expression study of SSH identified transcripts in the kidney of brown trout during sporogonic stages of the European strain of T. bryosalmonae development. In this study, we identified 21 differentially expressed transcripts, which have functions such as cellular stress, cell growth, protein biosynthesis, signal transduction, ion transporter, humoral immune response, antigen processing and presentation, hemoglobin and calcium/phosphate metabolisms. At 6 wpe (low number of pre-sporogonic stages and low parasite load), tested transcripts except hemoglobin and stanniocalcin were up-regulated. Afterwards, at 8–10 wpe (when the sporogonic stages and parasite load were increased in the kidney), the expression levels of tested transcripts (CIRBP, CDKN2A, TPRA and MHC-I) were reached to their highest levels (Figures 2 and 3). The significant transcriptional up-regulation and down-regulation of these host gene responses that we observed, suggests that they may play a role in the development of the parasite sporogonic stages in kidney tubules of the brown trout.
Cell stress, cell growth regulation and cell proliferation
Cell stress, cell proliferation and cell growth regulation genes which code for proteins such as cold-inducible RNA-binding protein, CDKN2AIP and PTMA-α, were differentially up-regulated in the kidneys of brown trout infected with T. bryosalmonae. CIRBP is a stress protein that plays a critical role in protective cellular activities and is linked with a wide range of molecular changes in response to stress . CIRBP is up-regulated in the skin mucus of Atlantic cod Gadus morhua infected with Vibrio anguillarum. We found that expression of CIRBP was up-regulated significantly in brown trout at sporogonic stages of the parasite. Cellular stress responses may therefore produce proteins that are involved in various cellular processes such as transcription, translation, and DNA recombination during infection by the parasite.
CDKN2AIP was up-regulated significantly in the kidney of brown trout at 6–10 wpe. CDKN2A, also known as p16, is a suppressor protein that plays an important role in the control of cell cycle regulation during G1-S phases . CDKN4BIP is up-regulated in the fins of Hofer strain rainbow trout infected with Myxobolus cerebralis and is up-regulated in naïve juvenile pink salmon Oncorhynchus gorbuscha infected with the salmon louse Lepeophtheirus salmonis. Our results suggest that T. bryosalmonae infection stimulates expression of cell growth regulation in the kidney of brown trout, which may result in inhibition of cyclin-dependent kinases and reduction of renal cell division, which may support development of the parasite in the kidney tissue. However, functional experiments are needed to verify the precise roles of CDKN2A in the development of parasite sporogonic stages in the kidney of fish.
PTMA-α is an abundant small acidic nuclear protein, which is associated with cell proliferation, protection against apoptosis and chromatin remodeling activity . Expression of PTMA-α is up-regulated in brown trout but down-regulated in rainbow trout during parasitic infection (unpublished data). We found PTMA-α was differentially up-regulated in infected brown trout. Up-regulation of PTMA-α in the kidney of infected brown trout suggests that cell proliferation and cell growth in that host do not impede sporogonic stages of T. bryosalmonae.
We found that signal transduction gene codes for signal regulatory protein such as TPRA, was differentially up-regulated in infected brown trout. TPRA is a small GTPase protein and part of Ras superfamily, which regulates the signal transduction pathway and actin cytoskeleton that is required during cell cycle cytokinesis . Rho small GTPases are up-regulated in zebrafish Danio rerio during development and bacterial Mycobacterium marinum infection . We found that the expression of TPRA was significantly up-regulated in the kidney of brown trout during T. bryosalmonae infection, suggesting that small GTPase mediated signal transduction may support parasite development. However, the function of small GTPase mediated signal transduction in the development of the parasite sporogonic stages in fish is not clear.
We found that the ribosomal and protein biosynthesis gene such as RPL6, was differentially up-regulated in infected brown trout. RPL6 is a ribosomal protein that makes up the ribosomal subunits, and which is involved in the cellular process of translation and protein biosynthesis . Other ribosomal proteins, such as L3 and S3, are up-regulated persistently in the intestine of gilthead sea bream in response to E. leei infection . We found that expression of RPL6 was up-regulated in the kidney of brown trout, which may be linked to its roles in activation of translation and protein biosynthesis for higher levels of renal cell growth during the parasite infection.
Humoral immune response, antigen processing and presentation
Immunoglobulin (Ig) and MHC-I were up-regulated in infected brown trout. Immunoglobulins, also known as antibodies, are antigen binding proteins present on the B cell membrane and produced by plasma cells that are used by the immune system to identify and neutralize micro-organisms . Expression of secretory forms of IgM and IgT are markedly up-regulated in the kidney of rainbow trout infected with T. bryosalmonae. We found that expression of Ig light chain kappa variable region was strongly up-regulated in the kidneys of brown trout concurrent with the developmental stages of T. bryosalmonae. Ig light chain kappa is a component of the variable region of every Ig, such as IgM . Similarly, we found that MHC-I was differentially up-regulated in brown trout infected with T. bryosalmonae. MHC-I is a cell surface molecule, expressed by nearly all nucleated cells and involved in the presentation of antigenic peptide to cytotoxic T cells . The beta-2 microglobulin component of MHC-I is up-regulated in the fin of rainbow trout Hofer strain infected with M. cerebralis. Similarly, we found up-regulation of MHC-I in the kidney of brown trout infected with T. bryosalmonae at 6–10 wpe. Our findings suggest that despite the elevated expression of immune responses, they do not influence the development of sporogonic stages of T. bryosalmonae in the kidney of brown trout but up-regulation of immune genes may not always generate protective responses against some pathogens, particularly when they occur in an uncoordinated manner.
Hemoglobin and calcium homeostasis
We found that hemoglobin subunit beta and stanniocalcin were differentially down-regulated in infected brown trout. Hemoglobin is the iron-containing oxygen-transport metalloprotein in erythrocytes . Expression of HBB is down-regulated in the intestine of gilthead sea bream in response to E. leei infection . Similarly, the ectoparasite Cryptocaryon irritans elicits down-regulation of hemoglobin in the liver of Asian sea bass Lates calcarifer. We found down-regulation of HBB in the kidney of infected brown trout, which suggests that erythropoiesis was suppressed in the infected fish, which could generate parasitemia and anemia in brown trout. The parasitemia has been recently confirmed by PCR in the blood samples of T. bryosalmonae infected brown trout at different time points .
Stanniocalcin (STC) is a glycoprotein hormone involved in renal and intestine calcium/phosphate homeostasis and cell metabolism . STC1 is expressed at higher levels in the human colon in response to infection with the protozoan parasite Entamoeba histolytica. STC1 is up and down-regulated in the head kidney of rainbow trout challenged with attenuated infectious hematopoietic necrosis virus . We found that the expression of STC was down-regulated significantly in the kidney of infected brown trout at 6 wpe, and undetectable 8–12 wpe, suggesting that T. bryosalmonae infection results in progressive down-regulation of calcium/phosphate metabolism activity in host renal cells, however, further investigations are needed to determine the function of STC, as well as their role in suppression of calcium/phosphate in fish during parasite infection.
In conclusion, we identified 21 transcripts with various functions that were differentially expressed in the kidney of brown trout infected with T. bryosalmonae. This study suggests that cell stress and cell growth processes, signal transduction activities, erythropoiesis and calcium homeostasis of the host are induced and modulated during the development of the pre-sporogonic stages of the parasite. In addition we found their expression levels reached to either peak or off-peak during sporogonic stages of parasite development, which may support the sporogenesis of T. bryosalmonae in the kidney of brown trout. Evidence in support of this was shown in rainbow trout which when infected with T. bryosalmonae were able to completely restore the renal structure and clear the majority of the parasite ,. In contrast, chronically infected brown trout were unable to either get rid of the parasite or completely restore the renal morphology ,. Therefore, the role of the transcripts identified cannot be separately discussed, since they may all be associated with the parasite development. This study provides key information for the understanding of brown trout kidney responses during the intra-luminal sporogonic stage of T. bryosalmonae development. Further research is needed to better understand how these candidate genes and their functions are involved in the development of intra-luminal sporogonic stages of T. bryosalmonae in the kidney of fish.
This study was funded by the Austrian Science Fund (FWF) project no. P 22770-B17. We are thankful to Dr Alexander Tichy for statistical analysis and Dr Stephen Atkinson for editorial input to the manuscript.
- Anderson CL, Canning EU, Okamura B: Molecular data implicate Bryozoans as hosts for PKX (Phylum Myxozoa) and identify a clade of bryozoan parasites within the Myxozoa. Parasitology. 1999, 119: 555-561. 10.1017/S003118209900520X.View ArticlePubMedGoogle Scholar
- Canning EU, Curry A, Feist SW, Longshaw M, Okamura B:Tetracapsula bryosalmonae n. sp. for PKX organism, the cause of PKD in salmonid fish. Bull Eur Ass Fish Pathol. 1999, 19: 203-206.Google Scholar
- Feist SW, Longshaw M, Canning EU, Okamura B: Induction of proliferative kidney disease (PKD) in rainbow trout Oncorhynchus mykiss via the bryozoan Fredericella sultana infected with Tetracapsula bryosalmonae. Dis Aquat Organ. 2001, 45: 61-68. 10.3354/dao045061.View ArticlePubMedGoogle Scholar
- Hedrick RP, MacConnell E, de Kinkelin P: Proliferative kidney disease of salmonid fish. Annu Rev Fish Dis. 1993, 3: 277-290. 10.1016/0959-8030(93)90039-E.View ArticleGoogle Scholar
- Clifton-Hadley RS, Bucke D, Richards RH: Economic importance of proliferative kidney disease of salmonid fish in England and Wales. Vet Rec. 1986, 119: 305-306. 10.1136/vr.119.12.305.View ArticlePubMedGoogle Scholar
- Wahli T, Knuessel R, Bernet D, Segner H, Pugovkin D, Burkhardt-Holm P, Escher M, Schmidt-Posthaus H: Proliferative kidney disease in Switzerland: current state of knowledge. J Fish Dis. 2002, 25: 491-500. 10.1046/j.1365-2761.2002.00401.x.View ArticleGoogle Scholar
- Sterud E, Forseth T, Ugedal O, Poppe TT, Jorgensen A, Bruheim T, Fjeldstad HP, Mo TA: Severe mortality in wild Atlantic salmon Salmo salar due to proliferative kidney disease (PKD) caused by Tetracapsuloides bryosalmonae (Myxozoa). Dis Aquat Organ. 2007, 77: 191-198. 10.3354/dao01846.View ArticlePubMedGoogle Scholar
- El-Matbouli M, Hoffman RW: Proliferative kidney disease (PKD) as an important myxosporean infection in salmonid fish. Parasitic Dis Fish. Edited by: Pike AW, Lewis JW. 1994, 3-15.Google Scholar
- Seagrave CP, Bucke D, Hudson EB, McGregor D: A survey of the prevalence and distribution of proliferative kidney disease (PKD) in England and Wales. J Fish Dis. 1981, 4: 437-439. 10.1111/j.1365-2761.1981.tb01155.x.View ArticleGoogle Scholar
- Morris DJ, Adams A, Richards RH: In situ hybridisation identifies the gill as a portal of entry for PKX (Phylum Myxozoa), the causative agent of proliferative kidney disease in salmonids. Parasitol Res. 2000, 86: 950-956. 10.1007/PL00008525.View ArticlePubMedGoogle Scholar
- Morris DJ, Adams A: Transmission of Tetracapsuloides bryosalmonae (Myxozoa: Malacosporea), the causative organism of salmonid proliferative kidney disease, to the freshwater bryozoan Fredericella sultana. Parasitology. 2006, 133: 701-709. 10.1017/S003118200600093X.View ArticlePubMedGoogle Scholar
- Grabner DS, El-Matbouli M: Transmission of Tetracapsuloides bryosalmonae (Myxozoa: Malacosporea) to Fredericella sultana (Bryozoa: Phylactolaemata) by various fish species. Dis Aquat Organ. 2008, 79: 133-139. 10.3354/dao01894.View ArticlePubMedGoogle Scholar
- Kumar G, Abd-Elfattah A, Saleh M, El-Matbouli M: Fate of Tetracapsuloides bryosalmonae (Myxozoa) after infection of brown trout Salmo trutta and rainbow trout Oncorhynchus mykiss. Dis Aquat Organ. 2013, 107: 9-18. 10.3354/dao02665.PubMed CentralView ArticlePubMedGoogle Scholar
- Abd-Elfattah A, Kumar G, Soliman H, El-Matbouli M: Persistence of Tetracapsuloides bryosalmonae (Myxozoa) in chronically infected brown trout (Salmo trutta). Dis Aquat Org. 2014, 111: 41-49. 10.3354/dao02768.PubMed CentralView ArticlePubMedGoogle Scholar
- Hillmann A, Dunne E, Kenny D: cDNA amplification by SMART-PCR and suppression subtractive hybridization (SSH)-PCR. Methods Mol Biol. 2009, 496: 223-243. 10.1007/978-1-59745-553-4_15.View ArticlePubMedGoogle Scholar
- Matejusová I, Felix B, Sorsa-Leslie T, Gilbey J, Noble LR, Jones CS, Cunningham CO: Gene expression profiles of some immune relevant genes from skin of susceptible and responding Atlantic salmon (Salmo salar L.) infected with Gyrodactylus salaris (Monogenea) revealed by suppressive subtractive hybridisation. Int J Parasitol. 2006, 36: 1175-1183. 10.1016/j.ijpara.2006.04.009.View ArticlePubMedGoogle Scholar
- Eszterbauer E, Kallert DM, Grabner D, El-Matbouli M: Differentially expressed parasite genes involved in host recognition and invasion of the triactinomyxon stage of Myxobolus cerebralis (Myxozoa). Parasitology. 2009, 136: 367-377. 10.1017/S0031182008005398.View ArticlePubMedGoogle Scholar
- Davey GC, Calduch-Giner JA, Houeix B, Talbot A, Sitjà-Bobadilla A, Prunetd P, Pérez-Sánchezb J, Cairnsa MT: Molecular profiling of the gilthead sea bream (Sparus aurata L.) response to chronic exposure to the myxosporean parasite Enteromyxum leei. Mol Immunol. 2011, 48: 2102-2112. 10.1016/j.molimm.2011.07.003.View ArticlePubMedGoogle Scholar
- Grabner DS, El-Matbouli M: Comparison of the susceptibility of brown trout (Salmo trutta) and four rainbow trout (Oncorhynchus mykiss) strains to the myxozoan Tetracapsuloides bryosalmonae, the causative agent of proliferative kidney disease (PKD). Vet Parasitol. 2009, 165: 200-206. 10.1016/j.vetpar.2009.07.028.View ArticlePubMedGoogle Scholar
- Rucker U, El-Matbouli M: Sequence analysis of OmNramp α and quantitative expression of Nramp homologues in different trout strains after infection with Myxobolus cerebralis. Dis Aquat Organ. 2007, 76: 223-230. 10.3354/dao076223.View ArticlePubMedGoogle Scholar
- Basic Local Alignment Search Tool., [http://blast.ncbi.nlm.nih.gov/Blast.cgi]
- Gene Ontology database.[http://www.geneontology.org/]
- UniProt database.[http://www.uniprot.org/]
- NCBI Primer-BLAST software., [http://www.ncbi.nlm.nih.gov/tools/primer-blast/]
- Sidak Z: Rectangular confidence regions for the means of multivariate normal distributions. J Am Stat Assoc. 1967, 62: 626-633.Google Scholar
- Chilmonczyk S, Monge D, de Kinkelin P: Proliferative kidney disease: cellular aspects of the rainbow trout, Oncorhynchus mykiss (Walbaum), response to parasitic infection. J Fish Dis. 2002, 25: 217-226. 10.1046/j.1365-2761.2002.00362.x.View ArticleGoogle Scholar
- Holland JW, Gould CRW, Jones CS, Noble LR, Secombes CJ: The expression of immune-regulatory genes in rainbow trout, Oncorhynchus mykiss, during a natural outbreak of proliferative kidney disease (PKD). Parasitology. 2003, 126: S95-S102. 10.1017/S0031182003003767.View ArticlePubMedGoogle Scholar
- Wang T, Holland JW, Martin SAM, Secombes CJ: Sequence and expression analysis of two T helper master transcription factors, T-bet and GATA3, in rainbow trout Oncorhynchus mykiss and analysis of their expression during bacterial and parasitic infection. Fish Shellfish Immunol. 2010, 29: 705-715. 10.1016/j.fsi.2010.06.016.View ArticlePubMedGoogle Scholar
- Gorgoglione B, Wang T, Secombes CJ, Holland JW: Immune gene expression profiling of proliferative kidney disease in rainbow troutOncorhynchus mykissreveals a dominance of anti-inflammatory, antibody and T helper cell-like activities.Vet Res 2013, 44:55.,Google Scholar
- Jones PG, Inouye M: The cold-shock response a hot topic. Mol Microbiol. 1994, 11: 811-818. 10.1111/j.1365-2958.1994.tb00359.x.View ArticlePubMedGoogle Scholar
- Rajan B, Lokesh J, Kiron V, Brinchmann MF: Differentially expressed proteins in the skin mucus of Atlantic cod (Gadus morhua) upon natural infection withVibrio anguillarum.BMC Vet Res 2013, 9:103.,Google Scholar
- Serrano M, Hannon GJ, Beach D: A new regulatory motif in cell-cycle control causing specific inhibition of cyclin D/CDK4. Nature. 1993, 366: 704-707. 10.1038/366704a0.View ArticlePubMedGoogle Scholar
- Baerwald MR, Welsh AB, Hedrick RP, May B: Discovery of genes implicated in whirling disease infection and resistance in rainbow trout using genome-wide expression profiling.BMC Genomics 2008, 9:37.,Google Scholar
- Sutherland BJG, Jantzen SG, Sanderson DS, Koop BF, Jones SRM: Differentiating size-dependent responses of juvenile pink salmon (Oncorhynchus gorbuscha) to sea lice (Lepeophtheirus salmonis) infections. Comp Biochem Physiol Part D Genomics Proteomics. 2011, 6: 213-223. 10.1016/j.cbd.2011.04.001.View ArticlePubMedGoogle Scholar
- Eschenfeldt WH, Berger SL: The human prothymosin alpha gene is polymorphic and induced upon growth stimulation: evidence using a cloned cDNA. Proc Natl Acad Sci U S A. 1986, 83: 9403-9407. 10.1073/pnas.83.24.9403.PubMed CentralView ArticlePubMedGoogle Scholar
- Kiss C, Li J, Szeles A, Gizatullin RZ, Kashuba VI, Lushnikova T, Protopopov AI, Kelve M, Kiss H, Kholodnyuk ID, Imreh S, Klein G, Zabarovsky ER: Assignment of the ARHA and GPX1 genes to human chromosome bands 3p21.3 by in situ hybridization and with somatic cell hybrids. Cytogenet Cell Genet. 1997, 79: 228-230. 10.1159/000134729.View ArticlePubMedGoogle Scholar
- Salas-Vidal E, Meijer AH, Cheng X, Spaink HP: Genomic annotation and expression analysis of the zebrafish Rho small GTPase family during development and bacterial infection. Genomics. 2005, 86: 25-37. 10.1016/j.ygeno.2005.03.010.View ArticlePubMedGoogle Scholar
- Hou XL, Mao Q, Zhang W, Jia LZ, Wang Q: Differentially expressed genes during accessory gland and seasonal development in Eriocheir sinensis. J Crustac Biol. 2010, 30: 93-100. 10.1651/09-3140.1.View ArticleGoogle Scholar
- Goldsby RA, Kindt TK, Osborne BA, Kuby J: Immunology. 2003, WH Freeman and Company, New YorkGoogle Scholar
- McMorrow T, Wagner A, Deryckere F, Gannon F: Structural organization and sequence analysis of the globin locus in Atlantic salmon. DNA Cell Biol. 1996, 15: 407-414. 10.1089/dna.1996.15.407.View ArticlePubMedGoogle Scholar
- Khoo CK, Abdul-Murad AM, Kua BC, Mohd-Adnan A:Cryptocaryon irritans infection induces the acute phase response in Lates calcarifer: A transcriptomic perspective. Fish Shellfish Immunol. 2012, 33: 788-794. 10.1016/j.fsi.2012.07.005.View ArticlePubMedGoogle Scholar
- McCudden CR, Kogon MR, DiMattia GE, Wagner GF: Novel expression of the stanniocalcin gene in fish. J Endocrinol. 2001, 171: 33-44. 10.1677/joe.0.1710033.View ArticlePubMedGoogle Scholar
- Zhang Z, Stanley SL: Stereotypic and specific elements of the human colonic response to Entamoeba histolytica and flexneri. Cell Microbiol. 2004, 6: 535-554. 10.1111/j.1462-5822.2004.00381.x.View ArticlePubMedGoogle Scholar
- MacKenzie S, Balasch JC, Novoa B, Ribas L, Roher N, Krasnov A, Figueras A: Comparative analysis of the acute response of the trout, O. mykiss, head kidney to in vivo challenge with virulent and attenuated infectious hematopoietic necrosis virus and LPS-induced inflammation.BMC Genomics 2008, 9:141.,Google Scholar
- Schmidt-Posthaus H, Bettge K, Segner H, Forster U, Wahli T: Kidney pathology and parasite intensity in rainbow trout Oncorhynchus mykiss surviving proliferative kidney disease: time course and influence of temperature. Dis Aquat Organ. 2012, 97: 207-218. 10.3354/dao02417.View ArticlePubMedGoogle Scholar
This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated