Table 3 Overview of the calculated SNP distances between isolates of same sequence type (ST23 and ST429) within a flock.
Flock ID | ST | Mean SNP distance | Median SNP distance | SNP range | Isolates/flock (n) |
|---|---|---|---|---|---|
56 | 23 | 1.2 | 1 | 0–2 | 5 |
57 | 23 | 1.2 | 1 | 0–2 | 5 |
58 | 23 | 8.7 | 13 | 0–13 | 3 |
59 | 23 | 0.4 | 0 | 0–1 | 5 |
62 | 23 | 19.8 | 32 | 0–33 | 5 |
63 | 23 | 2.4 | 2.5 | 1–4 | 5 |
65 | 23 | 7.4 | 7 | 1–13 | 5 |
69 | 23 | 6.6 | 7 | 1–11 | 5 |
70 | 23 | 1.4 | 1.5 | 0–2 | 5 |
73 | 23 | 2.4 | 2.5 | 1–4 | 5 |
74 | 23 | 7.4 | 3 | 1–17 | 5 |
78 | 23 | 7.6 | 12 | 0–13 | 5 |
80 | 23 | 0.6 | 1 | 0–1 | 3 |
90 | 23 | 13.1 | 3 | 1–31 | 5 |
101 | 23 | 2.2 | 2.5 | 0–4 | 5 |
103 | 23 | 2 | 2 | 0–3 | 5 |
104 | 23 | 3 | 4 | 1–7 | 5 |
3 | 429 | 3.3 | 4 | 0–5 | 4 |
6 | 429 | 8.8 | 5 | 2–19 | 5 |
7 | 429 | 4.4 | 0 | 0–11 | 5 |
9 | 429 | 6.8 | 2 | 0–17 | 5 |
10 | 429 | 2.8 | 2.5 | 0–6 | 5 |
11 | 429 | 0.7 | 1 | 0–1 | 4 |
29 | 429 | 11.6 | 10.5 | 4–21 | 5 |