Table 9 Top 10 differentially abundant Amplicon Sequence Variants (ASVs) in the pars oesophagea associated with high macroscopic lesion score in a Differential Abundance Analysis (DAA) adjusted for the barns and presence of H. suis in the pyloric gland zone
ASV taxonomy | logFC | logCPM | p-value |
|---|---|---|---|
s__Veillonella | 4.22 | 7.18 | 7.96E-05 |
s__Veillonella | 3.76 | 6.99 | 0.000736 |
s__Veillonella | 3.03 | 7.06 | 0.00274 |
s__Campylobacter | 2.85 | 7.29 | 0.000569 |
s__Campylobacter | 2.45 | 7.02 | 0.00345 |
s__Campylobacter | 2.42 | 7.31 | 0.00303 |
s__Lactobacillus | −2.07 | 8.83 | 0.00299 |
s__Lactobacillus | −2.07 | 7.88 | 0.00349 |
s__Lactobacillus | −2.10 | 8.089 | 0.00319 |
s__Lactobacillus | −2.11 | 7.87 | 0.00312 |