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Table 10 Top 10 differentially abundant Amplicon Sequence Variants (ASVs) in the pars oesophagea associated with high macroscopic lesion score in a Differential Abundance Analysis (DAA) adjusted for the barns and presence of H. suis in the fundic gland zone

From: The role of Helicobacter suis, Fusobacterium gastrosuis, and the pars oesophageal microbiota in gastric ulceration in slaughter pigs receiving meal or pelleted feed

ASV taxonomy

logFC

logCPM

p-value

Unnamed_organism_85

3.39

6.80

0.00151

Unnamed_organism_60

3.23

6.90

0.00209

Unnamed_organism_76

2.93

6.80

0.00351

Unnamed_organism_73

2.73

6.82

0.00270

Unnamed_Campylobacter_3

2.54

7.22

0.00108

Unnamed_Helicobacter_30

2.14

7.21

0.00263

Unnamed_Clostridium sensu stricto 1_60

0.67

9.37

0.00280

Unnamed_Lactobacillus_86

−2.09

8.78

0.00231

Unnamed_Lactobacillus_126

−2.15

8.52

0.00274

Unnamed_Lactobacillus_183

−2.16

8.21

0.00329

  1. p-values are unadjusted, but the threshold for 5% False Discovery Rate (FDR) was estimated at 0.0036. Full table is available in Additional file 2.
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Veterinary Research

ISSN: 1297-9716