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Table 1 Definition of the eleven genotypes identified in the study area, 2007–2019.

From: Analysis of a multi-type resurgence of Mycobacterium bovis in cattle and badgers in Southwest France, 2007-2019

Genotype

Spoligotype profiles

MLVA profiles (MIRU-VNTR)

Name

Deleted spacers

G1

SB0821

3, 5–6, 9, 16–21, 33, 39–43

6 5 5 3 11 2 5sa 8

G2

SB0832

3, 5–6, 9, 16, 33, 39–43

6 5 5 3 11 2 4s 8

G3

SB0928

1–24, 26–28, 33, 39–43

6 7 3 3 10 2 7s 9

G4

SB0120

3, 9, 16, 39–43

5 3 5 3 11 2 5 6

G5

SB0121

3, 9, 16, 21, 39–43

5 2 5 3 8 2 5 6

G6

SB0120

3, 9, 16, 39–43

5 2 5 3 8 2 5 6

G7

SB0121

3, 9, 16, 21, 39–43

5 4 5 4 11 2 5 9

G8

SB0121

3, 9, 16, 21, 39–43

6 4 5 3 11 2 5 7

G9

SB0823

3, 5–6, 9, 16, 27–29

6 5 5 3 11 2 5s 6

G10

SB0851

3, 5–6, 9, 16, 33, 37, 39–43

5 5 5 3 11 2 5s 8

G11

SB0853

1–17, 23–24, 39–43

3 6 5 2 9 3 4 6

  1. aThe letter “s” denotes the presence of a truncated (“short”) repetition at a given locus.