Figure 3
Network analysis of ED18 intestinal villi-enteroid RNA-seq expression data. Main component of the network graph derived from all five data sets samples. Here, the nodes represent transcripts (genes) and the edges represent correlations between individual expression profiles above r ≥ 0.95. Clusters that contain genes which are predominantly expressed at similar levels in all enteroids occupy different regions in the network graph. Coloured broken lines delineate these regions containing clusters of genes with similar mean expression profiles (A–F). The graph x axis shows the samples ordered from time of cultures. The y axis shows the mean expression intensity (transcripts/million reads, TPM) for the cluster.