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Table 3 Secretion systems distribution in the four Flavobacterium columnare genomes

From: Comparative genomics of Flavobacterium columnare unveils novel insights in virulence and antimicrobial resistance mechanisms

 

T2SS

M.G

A.G

F.G

gspD

gspG

gspH

gspM

gspE

gspJ

gspK

gspF

gspI

gspL

gspO

gspC

gspN

pilM

tadZ

ATCC 49512

     

1

       

1

 

JIP P11/91a

     

1

       

1

 

04017018a

     

1

       

1

 

CDI-Aa

     

1

       

1

 
 

T4P

M.G

A.G

F.G

pilM

pilI_pilV

pilC

pilAE

pilP

pilO

pilQ

pilT_pilU

pilB

pilD

gspC

tadZ

gspN

ATCC 49512

1

 

1

   

1

 

1

    

JIP P11/91a

1

 

1

   

1

 

1

    

04017018a

1

 

1

   

1

 

1

    

CDI-Aa

1

 

1

   

1

 

1

    
 

T3SS

T1SS

M.G.

F.G.

M.G.

sctN

sctJ

sctT

sctV

sctC

sctU

sctQ

sctR

sctS

fliE

flgB

flgC

mfp

abc

omf

ATCC 49512

2

           

3

6

4

JIP P11/91a

2

           

3

6

5

04017018a

2

           

3

6

4

CDI-Aa

2

           

3

6

5

 

T6SSi

M.G.

tssL

tssI

tssJ

tssH

tssD

tssB

tssM

tssC

evpJ

tssG

tssE

tssK

tssF

tssA

ATCC 49512

   

2

          

JIP P11/91a

   

2

          

04017018a

   

2

          

CDI-Aa

   

2

          
 

T6SSiii

M.G.

tssK

tssC

tssE

tssI

tssN

tssP

tssH

tssF

tssD

tssG

tssB

tssQ

ATCC 49512

1

1

1

4

1

1

1

1

8

1

1

 

JIP P11/91a

1

1

1

1

1

1

1

1

2

1

1

 

04017018a

1

1

1

1

1

1

1

1

4

1

1

 

CDI-Aa

1

1

1

1

1

1

1

1

4

1

1

 
 

T4SS type B

M.G.

A.G.

t4cp1

MOBB

virb4

traF

traN

traO

traJ

traL

traP

traI

traH

traK

traQ

traE

traM

ATCC 49512

               

JIP P11/91a

2

1

1

1

1

1

1

  

1

 

1

1

1

1

04017018a

1

              

CDI-Aa

2

1

1

1

1

1

1

  

1

 

1

1

1

1

 

T9SS

M.G.

A.G.

gldM

sprT

gldN

sprA

porV

gldL

sprE

gldK

porQ

porU

gldJ

ATCC 49512

1

1

1

1

1

1

1

1

2

1

1

JIP P11/91a

1

1

1

1

1

1

1

1

2

1

1

04017018a

1

1

1

1

1

1

1

1

2

1

1

CDI-Aa

1

1

1

1

1

1

1

1

2

1

1

  1. a Indicate the isolates for which whole-genome sequencing was performed in this study.
  2. b Forbidden genes are based on Abby et al. [39].
  3. M.G., mandatory genes (genes that must be present in the genome to define this system); A.G., accessory genes (genes that can be present, but do not have to be found in every case); and F.G., forbidden genesb (genes that must not be present in the system).
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Veterinary Research

ISSN: 1297-9716