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Table 3 Secretion systems distribution in the four Flavobacterium columnare genomes

From: Comparative genomics of Flavobacterium columnare unveils novel insights in virulence and antimicrobial resistance mechanisms

  T2SS
M.G A.G F.G
gspD gspG gspH gspM gspE gspJ gspK gspF gspI gspL gspO gspC gspN pilM tadZ
ATCC 49512       1         1  
JIP P11/91a       1         1  
04017018a       1         1  
CDI-Aa       1         1  
  T4P
M.G A.G F.G
pilM pilI_pilV pilC pilAE pilP pilO pilQ pilT_pilU pilB pilD gspC tadZ gspN
ATCC 49512 1   1     1   1     
JIP P11/91a 1   1     1   1     
04017018a 1   1     1   1     
CDI-Aa 1   1     1   1     
  T3SS T1SS
M.G. F.G. M.G.
sctN sctJ sctT sctV sctC sctU sctQ sctR sctS fliE flgB flgC mfp abc omf
ATCC 49512 2             3 6 4
JIP P11/91a 2             3 6 5
04017018a 2             3 6 4
CDI-Aa 2             3 6 5
  T6SSi
M.G.
tssL tssI tssJ tssH tssD tssB tssM tssC evpJ tssG tssE tssK tssF tssA
ATCC 49512     2           
JIP P11/91a     2           
04017018a     2           
CDI-Aa     2           
  T6SSiii
M.G.
tssK tssC tssE tssI tssN tssP tssH tssF tssD tssG tssB tssQ
ATCC 49512 1 1 1 4 1 1 1 1 8 1 1  
JIP P11/91a 1 1 1 1 1 1 1 1 2 1 1  
04017018a 1 1 1 1 1 1 1 1 4 1 1  
CDI-Aa 1 1 1 1 1 1 1 1 4 1 1  
  T4SS type B
M.G. A.G.
t4cp1 MOBB virb4 traF traN traO traJ traL traP traI traH traK traQ traE traM
ATCC 49512                
JIP P11/91a 2 1 1 1 1 1 1    1   1 1 1 1
04017018a 1               
CDI-Aa 2 1 1 1 1 1 1    1   1 1 1 1
  T9SS
M.G. A.G.
gldM sprT gldN sprA porV gldL sprE gldK porQ porU gldJ
ATCC 49512 1 1 1 1 1 1 1 1 2 1 1
JIP P11/91a 1 1 1 1 1 1 1 1 2 1 1
04017018a 1 1 1 1 1 1 1 1 2 1 1
CDI-Aa 1 1 1 1 1 1 1 1 2 1 1
  1. a Indicate the isolates for which whole-genome sequencing was performed in this study.
  2. b Forbidden genes are based on Abby et al. [39].
  3. M.G., mandatory genes (genes that must be present in the genome to define this system); A.G., accessory genes (genes that can be present, but do not have to be found in every case); and F.G., forbidden genesb (genes that must not be present in the system).