Table 2 List of downregulated posterior intestine proteins of rainbow trout in response to Yersinia ruckeri strains
Accession Refseq | Protein name | Number of quantified peptides | Biological process | Intestine in response to Y. ruckeri strain | 3 dpe (fold change) | 9 dpe (fold change) | 28 dpe (fold change) |
|---|---|---|---|---|---|---|---|
NP_001117719.1 | Apolipoprotein A-I-1 | 6 | Lipid metabolism | Biotype 1 | −1.3 | −1.1 | −1.6 |
Biotype 2 | −2.2* | −1.2 | −1.1 | ||||
NP_001154920.1 | Apolipoprotein A-II | 4 | Lipid metabolism | Biotype 1 | −2.1* | −1.0 | −1.7 |
Biotype 2 | −4.0* | 1.1 | −1.3 | ||||
XP_021447265.1 | Apolipoprotein C-I | 2 | Lipid metabolism | Biotype 1 | −1.7 | 1.1 | −3.1* |
Biotype 2 | −4.6* | −1.3 | −2.7 | ||||
XP_021422847.1 | Filamin-A | 6 | Actin filament binding | Biotype 1 | −3.2* | −2.8 | −1.5 |
Biotype 2 | −10.4* | −2.8 | −1.4 | ||||
XP_021438757.1 | Alpha-actinin-1 | 6 | Actin filament binding | Biotype 1 | −2.4* | −1.7 | −1.2 |
Biotype 2 | −6.3* | −1.9 | 1.3 | ||||
XP_021474949.1 | PDZ and LIM domain protein 3 | 2 | Alpha-actinin binding | Biotype 1 | −4.2* | −2.5* | −1.1 |
Biotype 2 | −22.6* | −1.7 | 1.1 | ||||
XP_021479779.1 | Dihydropyrimidinase-related protein 3 | 6 | Actin filament bundle assembly | Biotype 1 | −2.4* | −1.7 | −1.3 |
Biotype 2 | −4.5* | −1.6 | −1.1 | ||||
XP_021449109.1 | Tubulin alpha chain | 3 | Microtubule process | Biotype 1 | −2.1* | 1.2 | −1.8 |
Biotype 2 | −4.9* | −1.2 | −1.6 | ||||
XP_021451765.1 | Tubulin polymerization-promoting protein | 6 | Microtubule binding | Biotype 1 | −3.6* | −1.7 | −1.3 |
Biotype 2 | −7.0* | −1.5 | −1.2 | ||||
XP_021480500.1 | DnaJ homolog subfamily C member 7 | 2 | Chaperone binding | Biotype 1 | −1.9 | 1.1 | −1.2 |
Biotype 2 | −3.2* | −1.4 | −1.0 | ||||
XP_021478259.1 | Lysosome membrane protein 2 | 2 | Chaperone activity | Biotype 1 | −2.6* | 1.1 | −1.3 |
Biotype 2 | −3.3* | −1.3 | −1.3 | ||||
NP_001117706.1 | Heat shock 47 precursor | 6 | Stress response | Biotype 1 | −3.7* | −1.4 | −1.1 |
Biotype 2 | −9.6* | −1.2 | 1.0 | ||||
XP_021438340.1 | Heat shock cognate 70 kDa protein-like | 6 | Chaperone activity | Biotype 1 | −1.9 | −1.1 | −1.3 |
Biotype 2 | −2.6* | −1.4 | −1.1 | ||||
XP_021441996.1 | Programmed cell death protein 5 | 2 | DNA binding | Biotype 1 | −2.7* | 1.2 | −1.7 |
Biotype 2 | −4.4* | −1.4 | −2.6* | ||||
XP_021418468.1 | Annexin A13 | 6 | Calcium ion binding | Biotype 1 | −2.0* | −1.6 | −1.8 |
Biotype 2 | −3.4* | −1.2 | −1.1 | ||||
XP_021416101.1 | Protein S100 A13 | 2 | Calcium binding | Biotype 1 | −3.2* | −1.1 | −1.5 |
Biotype 2 | −6.6* | −1.3 | −1.1 | ||||
NP_001117701.1 | M-calpain | 6 | Calcium ion binding | Biotype 1 | −2.0* | −1.2 | −1.0 |
Biotype 2 | −4.0* | −1.4 | 1.0 | ||||
NP_001117963.1 | Calpain 2 catalytic subunit | 5 | Calcium ion binding | Biotype 1 | −1.8 | −1.1 | −1.1 |
Biotype 2 | −2.6* | −1.0 | −1.0 | ||||
XP_021419099.1 | l-Lactate dehydrogenase | 2 | Carboxylic acid metabolic process | Biotype 1 | −3.4* | −1.5 | −1.8 |
Biotype 2 | −7.4* | −1.7 | 1.3 | ||||
XP_021452473.1 | Glyceraldehyde-3-phosphate dehydrogenase | 4 | Glycolysis process | Biotype 1 | −1.8 | −1.2 | −1.3 |
Biotype 2 | −2.9* | −1.1 | −1.1 | ||||
XP_021447060.1 | Pyruvate dehydrogenase E1 | 4 | Glucose metabolic process | Biotype 1 | −2.1* | 1.2 | 1.0 |
Biotype 2 | −1.7 | 1.1 | −1.0 | ||||
XP_021440913.1 | Galectin-5-like isoform X2 | 2 | Carbohydrate binding | Biotype 1 | −2.3* | 1.0 | 1.1 |
Biotype 2 | −3.9* | 1.4 | −1.2 | ||||
XP_021476056.1 | Eukaryotic translation initiation factor 5A | 5 | Translation | Biotype 1 | −1.4 | 1.1 | −1.4 |
Biotype 2 | −2.4* | −1.3 | −1.6 | ||||
XP_021467048.1 | 40S ribosomal protein S12 | 5 | Translation | Biotype 1 | −1.1 | 1.4 | −1.2 |
Biotype 2 | −2.2* | 1.2 | 1.3 | ||||
XP_021456583.1 | 40S ribosomal protein S29 | 3 | Translation | Biotype 1 | −3.4* | 1.0 | −1.2 |
Biotype 2 | −2.9* | −1.0 | −1.3 |