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Table 2 List of downregulated posterior intestine proteins of rainbow trout in response to Yersinia ruckeri strains

From: Modulation of posterior intestinal mucosal proteome in rainbow trout (Oncorhynchus mykiss) after Yersinia ruckeri infection

Accession Refseq Protein name Number of quantified peptides Biological process Intestine in response to Y. ruckeri strain 3 dpe (fold change) 9 dpe (fold change) 28 dpe (fold change)
NP_001117719.1 Apolipoprotein A-I-1 6 Lipid metabolism Biotype 1 −1.3 −1.1 −1.6
Biotype 2 −2.2* −1.2 −1.1
NP_001154920.1 Apolipoprotein A-II 4 Lipid metabolism Biotype 1 −2.1* −1.0 −1.7
Biotype 2 −4.0* 1.1 −1.3
XP_021447265.1 Apolipoprotein C-I 2 Lipid metabolism Biotype 1 −1.7 1.1 −3.1*
Biotype 2 −4.6* −1.3 −2.7
XP_021422847.1 Filamin-A 6 Actin filament binding Biotype 1 −3.2* −2.8 −1.5
Biotype 2 −10.4* −2.8 −1.4
XP_021438757.1 Alpha-actinin-1 6 Actin filament binding Biotype 1 −2.4* −1.7 −1.2
Biotype 2 −6.3* −1.9 1.3
XP_021474949.1 PDZ and LIM domain protein 3 2 Alpha-actinin binding Biotype 1 −4.2* −2.5* −1.1
Biotype 2 −22.6* −1.7 1.1
XP_021479779.1 Dihydropyrimidinase-related protein 3 6 Actin filament bundle assembly Biotype 1 −2.4* −1.7 −1.3
Biotype 2 −4.5* −1.6 −1.1
XP_021449109.1 Tubulin alpha chain 3 Microtubule process Biotype 1 −2.1* 1.2 −1.8
Biotype 2 −4.9* −1.2 −1.6
XP_021451765.1 Tubulin polymerization-promoting protein 6 Microtubule binding Biotype 1 −3.6* −1.7 −1.3
Biotype 2 −7.0* −1.5 −1.2
XP_021480500.1 DnaJ homolog subfamily C member 7 2 Chaperone binding Biotype 1 −1.9 1.1 −1.2
Biotype 2 −3.2* −1.4 −1.0
XP_021478259.1 Lysosome membrane protein 2 2 Chaperone activity Biotype 1 −2.6* 1.1 −1.3
Biotype 2 −3.3* −1.3 −1.3
NP_001117706.1 Heat shock 47 precursor 6 Stress response Biotype 1 −3.7* −1.4 −1.1
Biotype 2 −9.6* −1.2 1.0
XP_021438340.1 Heat shock cognate 70 kDa protein-like 6 Chaperone activity Biotype 1 −1.9 −1.1 −1.3
Biotype 2 −2.6* −1.4 −1.1
XP_021441996.1 Programmed cell death protein 5 2 DNA binding Biotype 1 −2.7* 1.2 −1.7
Biotype 2 −4.4* −1.4 −2.6*
XP_021418468.1 Annexin A13 6 Calcium ion binding Biotype 1 −2.0* −1.6 −1.8
Biotype 2 −3.4* −1.2 −1.1
XP_021416101.1 Protein S100 A13 2 Calcium binding Biotype 1 −3.2* −1.1 −1.5
Biotype 2 −6.6* −1.3 −1.1
NP_001117701.1 M-calpain 6 Calcium ion binding Biotype 1 −2.0* −1.2 −1.0
Biotype 2 −4.0* −1.4 1.0
NP_001117963.1 Calpain 2 catalytic subunit 5 Calcium ion binding Biotype 1 −1.8 −1.1 −1.1
Biotype 2 −2.6* −1.0 −1.0
XP_021419099.1 l-Lactate dehydrogenase 2 Carboxylic acid metabolic process Biotype 1 −3.4* −1.5 −1.8
Biotype 2 −7.4* −1.7 1.3
XP_021452473.1 Glyceraldehyde-3-phosphate dehydrogenase 4 Glycolysis process Biotype 1 −1.8 −1.2 −1.3
Biotype 2 −2.9* −1.1 −1.1
XP_021447060.1 Pyruvate dehydrogenase E1 4 Glucose metabolic process Biotype 1 −2.1* 1.2 1.0
Biotype 2 −1.7 1.1 −1.0
XP_021440913.1 Galectin-5-like isoform X2 2 Carbohydrate binding Biotype 1 −2.3* 1.0 1.1
Biotype 2 −3.9* 1.4 −1.2
XP_021476056.1 Eukaryotic translation initiation factor 5A 5 Translation Biotype 1 −1.4 1.1 −1.4
Biotype 2 −2.4* −1.3 −1.6
XP_021467048.1 40S ribosomal protein S12 5 Translation Biotype 1 −1.1 1.4 −1.2
Biotype 2 −2.2* 1.2 1.3
XP_021456583.1 40S ribosomal protein S29 3 Translation Biotype 1 −3.4* 1.0 −1.2
Biotype 2 −2.9* −1.0 −1.3
  1. Fold change was statistically analyzed in the posterior intestine of rainbow trout exposed to Y. ruckeri biotype 1 (CSF007-82) and biotype 2 (A7959-11) versus control posterior intestine of rainbow trout samples (n = 3 per time point).
  2. * Statistically significant difference according to both ANOVA and post hoc Tukey’s HSD with FDR-adjusted p-value < 0.05 and fold change < −2 or > +2. (Full table is presented in Additional file 4).