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Table 1 Overview of the main differences in relative abundance of taxa at phylum, family, genus and species level in the Pars oesophagea of the H. suis -positive and -negative pigs

From: Characterization of the non-glandular gastric region microbiota in Helicobacter suis-infected versus non-infected pigs identifies a potential role for Fusobacterium gastrosuis in gastric ulceration

Level Taxa H. suis + H. suis p-value Corrected p-value
Phylum Fusobacteria 4.20 ± 1.02 1.26 ± 0.51 0.018 0.190
Family Fusobacteriaceae 3.50 ± 0.83 0.94 ± 0.36 0.015 0.060
Porphyromonadaceae 3.25 ± 0.51 0.19 ± 0.08 0.002 0.059
Bacteroidaceae 0.25 ± 0.09 0.03 ± 0.02 0.028 0.206
Clostridiaceae_1 18.02 ± 7.23 3.51 ± 1.44 0.045 0.262
Gammaproteobacteriaceae_unclassified 2.02 ± 0.73 0.35 ± 0.19 0.021 0.177
Actinobacteria_unclassified 0.00 ± 0.00 0.03 ± 0.01 0.005 0.051
Bifidobacteriaceae 0.00 ± 0.00 0.13 ± 0.06 0.005 0.054
Corynebacteriaceae 0.02 ± 0.01 0.27 ± 0.18 0.060 0.285
Coriobacteriaceae 0.01 ± 0.01 0.10 ± 0.05 0.049 0.283
Streptococcaceae 1.62 ± 0.84 2.38 ± 0.98 0.137 0.475
Genus Fusobacterium 3.49 ± 0.83 0.94 ± 0.36 0.009 0.075
Porphyromonas 2.51 ± 1.24 0.17 ± 0.07 0.007 0.073
Porphyromonadaceae_unclassified 0.67 ± 0.34 0.02 ± 0.01 0.042 0.246
Bacteroides 0.25 ± 0.09 0.03 ± 0.02 0.021 0.154
Alloprevotella 3.66 ± 1.58 0.70 ± 0.35 0.034 0.219
Clostridium_sensu_stricto_1 16.93 ± 6.80 3.03 ± 1.19 0.035 0.221
Leuconostoc 0.02 ± 0.01 0.00 ± 0.00 < 0.001 0.019
Pasteurella 0.03 ± 0.01 0.00 ± 0.00 0.003 0.042
Gammaproteobacteria_unclassified 2.02 ± 0.73 0.35 ± 0.19 0.029 0.199
Actinobacteria_unclassified 0.00 ± 0.00 0.03 ± 0.01 0.003 0.040
Bifidobacterium 0.00 ± 0.00 0.13 ± 0.06 0.008 0.072
Corynebacteriaceae_unclassified 0.00 ± 0.00 0.01 ± 0.00 0.038 0.236
Lachnospiraceae_UCG-007 0.00 ± 0.00 0.02 ± 0.01 < 0.001 0.015
Lachnospiraceae_XPB1014_group 0.00 ± 0.00 0.03 ± 0.02 0.004 0.045
Staphylococcus 0.00 ± 0.00 0.02 ± 0.01 < 0.001 0.054
Aerococcus 0.00 ± 0.00 0.11 ± 0.06 0.009 0.078
Selenomonas 0.00 ± 0.00 0.30 ± 0.15 < 0.001 0.036
Megasphaera 0.02 ± 0.01 1.14 ± 0.70 0.014 0.113
Mitsuokella 0.01 ± 0.01 0.20 ± 0.08 0.011 0.091
Veillonellaceae_unclassified 0.01 ± 0.01 0.42 ± 0.32 0.048 0.272
Species Fusobacterium gastrosuis 3.11 ± 0.78 0.91 ± 0.35 0.015 0.068
Porphyromonas_16S_OTU40 0.96 ± 0.37 0.04 ± 0.02 < 0.001 0.037
Porphyromonas_16S_OTU24 1.36 ± 0.86 0.09 ± 0.04 0.041 0.595
Porphyromonas_16S_OTU293 0.05 ± 0.02 0.01 ± 0.00 0.068 0.817
Porphyromonadaceae_unclassified_16S_OTU1254 0.02 ± 0.01 0.00 ± 0.00 < 0.001 0.349
Porphyromonadaceae_unclassified_16S_OTU61 0.50 ± 0.27 0.01 ± 0.01 0.041 0.600
Porphyromonadaceae_unclassified_16S_OTU212 0.10 ± 0.07 0.00 ± 0.00 0.082 0.930
Bacteroides_16S_OTU103 0.19 ± 0.09 0.02 ± 0.01 0.041 0.598
Species Bacteroidales_unclassified_16S_OTU977 0.01 ± 0.00 0.00 ± 0.00 0.016 0.335
Alloprevotella_16S_OTU50 0.74 ± 0.37 0.02 ± 0.01 0.026 0.475
Alloprevotella_16S_OTU1438 0.02 ± 0.01 0.00 ± 0.00 0.069 0.822
Clostridium_sensu_stricto_1_GQ249583 7.32 ± 2.86 1.26 ± 0.50 0.045 0.651
Leuconostoc_16S_OTU708 0.02 ± 0.01 0.00 ± 0.00 < 0.001 0.047
Pasteurella multocida 0.03 ± 0.01 0.00 ± 0.00 0.004 0.114
Gammaproteobacteria_unidentified_16S_OTU46 0.30 ± 0.17 1.93 ± 0.69 0.045 0.424
Bifidobacterium AB034094 0.00 ± 0.00 0.07 ± 0.03 0.035 0.537
Bifidobacterium thermophilum 0.00 ± 0.00 0.05 ± 0.03 0.005 0.141
Streptococcus_16S_OTU295 0.01 ± 0.01 0.08 ± 0.04 0.083 0.936
Lachnospiraceae_UCG-007_16S_OTU727 0.00 ± 0.00 0.02 ± 0.01 < 0.001 1.278
Lachnospiraceae_XPB1014_group_AB506358 0.00 ± 0.00 0.03 ± 0.02 0.003 0.093
Staphylococcus EU341210 0.00 ± 0.00 0.01 ± 0.00 0.016 0.304
Aerococcus suis 0.00 ± 0.00 0.09 ± 0.05 0.003 0.092
Selenomonas bovis 0.00 ± 0.00 0.30 ± 0.15 < 0.001 0.046
Megasphaera KF842421 0.00 ± 0.00 0.15 ± 0.08 < 0.001 0.034
Megasphaera_16S_OTU1576 0.00 ± 0.00 0.02 ± 0.01 < 0.001 0.051
Megasphaera_16S_OTU1120 0.00 ± 0.00 0.04 ± 0.01 0.011 0.260
Megasphaera elsdenii 0.01 ± 0.01 0.82 ± 0.53 0.027 0.491
Mitsuokella_16S_OTU1562 0.00 ± 0.00 0.01 ± 0.00 0.031 0.521
Mitsuokella AB506409 0.00 ± 0.00 0.03 ± 0.01 0.041 0.602
Mitsuokella AM500804 0.00 ± 0.00 0.03 ± 0.02 < 0.001 0.060
Mitsuokella DQ797043 0.00 ± 0.00 0.08 ± 0.04 0.033 0.510
Veilonellaceae_unclassified_16S_OTU715 0.00 ± 0.00 0.03 ± 0.01 < 0.001 0.035
Veilonellaceae_unclassfied_16S_OTU1085 0.00 ± 0.00 0.02 ± 0.01 0.049 0.717
  1. The data are presented as the mean relative abundance of the taxa with the standard error of the mean. Statistical differences were calculated using the non-parametric Kruskal–Wallis tests with Tukey post hoc tests and Benjamini–Hochberg False Discovery Rate were performed using STAMP. A corrected p-value lower than 0.05 is considered to be significant.