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Table 1 The DEG listed involved in the pattern recognition receptor pathway and Jak-STAT signaling pathway in ALV-J-infected MDM

From: A balanced game: chicken macrophage response to ALV-J infection

Gene ID Gene name Biological processes log2 (fold change) 3 hpi, 36 hpi Source of DEG
Pattern recognition receptor pathway Toll-like receptor signaling pathway; NOD-like receptor signaling pathway; RIG-I-like receptor signaling pathway; Cytosolic DNA-sensing pathway
 ENSGALG00000007015 CD40 3.89259, – 3 hpi
 ENSGALG00000015474 CD80 1.74169, – 3 hpi
 ENSGALG00000011389 TRAF3 , 3.76105, – 3 hpi
 ENSGALG00000007932 TRAF6 , , 1.27085, – 3 hpi
 ENSGALG00000009014 TRAF2 2.74956, 1.13451 3 hpi and 36 hpi
 ENSGALG00000000951 CCL5 , 4.20314, – 3 hpi
 ENSGALG00000013356 IKBKE , , 2.38933, 1.06398 3 hpi and 36 hpi
 ENSGALG00000014297 IRF7 , , 4.51047, – 3 hpi
 ENSGALG00000000534 IL1β , , 8.57939, – 3 hpi
 ENSGALG00000011668 K60 (IL8L1) , , 7.00993, – 3 hpi
 ENSGALG00000026098 IL8 (IL8L2) , , 5.96016, 1.67045 3 hpi and 36 hpi
 ENSGALG00000008612 MAPK11(p38Beta) , , 1.56955, – 3 hpi
 ENSGALG00000004735 MAP2K3(MKK3) 1.62121, – 3 hpi
 ENSGALG00000007356 MAP3K8 3.52264, – 3 hpi
 ENSGALG00000012304 NFKB1 , , , 3.76626, – 3 hpi
 ENSGALG00000003428 PIK3R2 1.30282, – 3 hpi
 ENSGALG00000021573 PIK3R5L 2.7941, 1.12565 3 hpi and 36 hpi
 ENSGALG00000026167 PIK3R5 2.77632, 1.13829 3 hpi and 36 hpi
 ENSGALG00000001077 TIRAP 2.04202, – 3 hpi
 ENSGALG00000013861 TNFAIP3 (A20) 3.42548, – 3 hpi
 ENSGALG00000017186 BIRC2 3.67041, – 3 hpi
 ENSGALG00000007874 IL18 , 2.72387, 1.6161 3 hpi and 36 hpi
 ENSGALG00000015899 RIPK2 4.27785, – 3 hpi
 ENSGALG00000021325 RIPK3 3.04709, – 3 hpi
 ENSGALG00000017485 TLR1A –, 1.47044 36 hpi
 ENSGALG00000027093 TLR1B –, 1.10129 36 hpi
 ENSGALG00000016590 TLR7 –, 1.15464 36 hpi
 ENSGALG00000008166 TLR15   2.10934, 1.89122 3 hpi and 36 hpi
 ENSGALG00000027864 NFKBIA   2.10466, 1.14704 3 hpi and 36 hpi
 ENSGALG00000005653 NFKB2   2.8071, 1.41077 3 hpi and 36 hpi
Jak-STAT signaling pathway
 ENSGALG00000002260 CISH (CIS) 2.58373, – 3 hpi
 ENSGALG00000003282 STAT5B 1.29572, – 3 hpi
 ENSGALG00000007158 SOCS1 4.22098, – 3 hpi
 ENSGALG00000027786 SOCS3 4.08564, 3.14348 3 hpi and 36 hpi
 ENSGALG00000010016 SOCS5 −1.07644, – 3 hpi