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Table 2 Genes analysed by RT-qPCR. Length of the PCR fragments amplified, and primers used

From: Analysis of the genetic diversity and mRNA expression level in porcine reproductive and respiratory syndrome virus vaccinated pigs that developed short or long viremias after challenge

Gene

Ensemble gene

Amplicon size (bp)

PCR primers

TLRs

   

TLR2a

ENSSSCG00000009002

162

TLR2-F 5′-TCACTTGTCTAACTTATCATCCTCTTG-3′

   

TLR2-R 5′-TCAGCGAAGGTGTCATTATTGC-3′

TLR3a

ENSSSCG00000015801

112

TLR3-F 5′-AGTAAATGAATCACCCTGCCTAGCA-3′

   

TLR3-R 5′-GCCGTTGACAAAACACATAAGGACT-3′

TLR4a

ENSSSCG00000005503

108

TLR4-F 5′-GCCATCGCTGCTAACATCATC-3′

   

TLR4-R 5′-CTCATACTCAAAGATACACCATCGG-3′

TLR5a

Gene ID 100144476

156

TLR5-F 5′-CTCGCCCACCACATTA-3′

   

TLR5-R 5′-TGAGGGTCCCAAAGAGT-3′

TLR7a

ENSSSCT00000035232.2

 

TLR7-F 5′-GGGAAAGCTCCAGTATCTGC-3′

   

TLR7-R 5′-TGAGGCTTCTGGAACAGTTG-3′

TLR8a

ENSSSCG00000012118

105

TLR8-F 5′-AAGACCACCACCAACTTAGCC-3′

   

TLR8-R 5′-GACCCTCAGATTCTCATCCATCC-3′

TLR9a

ENSSSCG00000011436

122

TLR9-F 5′-CACGACAGCCGAATAGCAC-3′

   

TLR9-R 5′-GGGAACAGGGAGCAGAGC-3′

TNF-αa

ENSSSCG00000001404

102

TNF-α-F 5′-TGGTGGTGCCGACAGATGG-3′

IFN-γa

ENSSSCT00000055560.1

132

TNFG-F-5′-CTGGGAAACTGAATGACTTCG-3′

TNFG-R-5′-TCTGACTTCTCTTCCGCTTTC-3′

  1. a[30].