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Table 3 Genes listed involved in multiple cell biological processes after CHv and CHa infection

From: RNA-seq comparative analysis of Peking ducks spleen gene expression 24 h post-infected with duck plague virulent or attenuated virus

Gene ID Gene name Gene description Source of DEGs
Antigen processing and presentation
 MHC-1 pathway
  101797502 MHC1 Major histocompatibility complex, class I CHv vs control
  101797680 TAP1 ATP-binding cassette, subfamily B (MDR/TAP), member 2 CHv vs control
  101797091 TAP2 ATP-binding cassette, subfamily B (MDR/TAP), member 3 CHv vs control
  101799108 β2m Beta-2-microglobulin CHv vs control and CHa vs control
 MHC-II pathway
  101801019 LGMN Legumain CHv vs control
  101803352 CD74 CD74 antigen
  101804125 MHC2 Major histocompatibility complex, class II CHv vs control and CHa vs control
  101803864 GILT Gamma-inducible protein 30
Cytokine-cytokine receptor interaction
 101799854 IFNGR1 Interferon gamma receptor 1 CHv vs control
 101794299 CSF2RB Cytokine receptor common subunit beta CHv vs control
 101791761 SF18 Tumor necrosis factor receptor superfamily member 18 CHv vs control
 101799587 PDGFRB Platelet-derived growth factor receptor beta CHv vs control
 101801232 SF21 Tumor necrosis factor receptor superfamily member 21 CHv vs control
 101795038 CX3CL1 C-X3-C motif chemokine 1 CHa vs control
 101790039 CCL19 C–C motif chemokine 19 CHa vs control
 101802287 TGFB3 Transforming growth factor beta-3 CHa vs control
 101793182 CNTFR Granulocyte–macrophage colony-stimulating factor receptor alpha CHa vs control
 101797327 FLT1 FMS-like tyrosine kinase 1 CHa vs control
 101792543 FLT4 FMS-like tyrosine kinase 4 CHa vs control
 101795963 IL22RA2 Interleukin 22 receptor alpha 2 CHa vs control
 101802521 IL15 Interleukin 15 CHv vs control and CHa vs control
 101803777 TNFSF13B Tumor necrosis factor ligand superfamily member 13B CHv vs control and CHa vs control
 101797830 EGFR Epidermal growth factor receptor CHv vs control and CHa vs control
Apoptosis
 101803461 PIK3CB Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta CHv vs control
 101793887 IL3RB Cytokine receptor common subunit beta CHv vs control
 101801064 IKKA Inhibitor of nuclear factor kappa-B kinase subunit alpha CHv vs control and CHa vs control
 101794069 CASP6 Caspase 6 CHv vs control and CHa vs control
Viral invasion
 Cell surface-related receptor
  101796910 HSPG2 Heparan sulfate proteoglycan 2 CHv vs control
  101791819 HS3ST5 Heparan sulfate glucosamine 3-O-sulfotransferase 5 CHv vs control
 Cell cytoskeletal-related protein
  101805015 TUBA1C Tubulin alpha-1C chain CHv vs control
  101805212 TUBA1B Tubulin alpha-1B chain CHv vs control
  101801170 KIF14 Kinesin protein KIF14 CHa vs control
  101793497 ACTA2 Actin, aortic smooth muscle CHv vs control
  101792376 ACTG2 Actin, gamma-enteric smooth muscle CHv vs control and CHa vs control
  101790019 AFAP1L2 Actin filament-associated protein 1-like 2 CHv vs control and CHa vs control
  101799368 MYL9 Myosin light chain 9 CHv vs control and CHa vs control
  101803563 MYH11 Myosin heavy chain 11 CHa vs control
 Inner nuclear membrane-related protein
  101797969 LMNA Lamin A/C CHv vs control and CHa vs control