RNA-seq comparative analysis of Peking ducks spleen gene expression 24 h post-infected with duck plague virulent or attenuated virus

Liu, Tian; Cheng, Anchun; Wang, Mingshu; Jia, Renyong; Yang, Qiao; Wu, Ying; Sun, Kunfeng; Zhu, Dekang; Chen, Shun; Liu, Mafeng; Zhao, XinXin; Chen, Xiaoyue

doi:10.1186/s13567-017-0456-z

Veterinary Research

Table 3 Genes listed involved in multiple cell biological processes after CHv and CHa infection

From: RNA-seq comparative analysis of Peking ducks spleen gene expression 24 h post-infected with duck plague virulent or attenuated virus

Gene ID	Gene name	Gene description	Source of DEGs
Antigen processing and presentation
MHC-1 pathway
101797502	MHC1	Major histocompatibility complex, class I	CHv vs control
101797680	TAP1	ATP-binding cassette, subfamily B (MDR/TAP), member 2	CHv vs control
101797091	TAP2	ATP-binding cassette, subfamily B (MDR/TAP), member 3	CHv vs control
101799108	β2m	Beta-2-microglobulin	CHv vs control and CHa vs control
MHC-II pathway
101801019	LGMN	Legumain	CHv vs control
101803352	CD74	CD74 antigen	CHv vs control
101804125	MHC2	Major histocompatibility complex, class II	CHv vs control and CHa vs control
101803864	GILT	Gamma-inducible protein 30	CHv vs control and CHa vs control
Cytokine-cytokine receptor interaction
101799854	IFNGR1	Interferon gamma receptor 1	CHv vs control
101794299	CSF2RB	Cytokine receptor common subunit beta	CHv vs control
101791761	SF18	Tumor necrosis factor receptor superfamily member 18	CHv vs control
101799587	PDGFRB	Platelet-derived growth factor receptor beta	CHv vs control
101801232	SF21	Tumor necrosis factor receptor superfamily member 21	CHv vs control
101795038	CX3CL1	C-X3-C motif chemokine 1	CHa vs control
101790039	CCL19	C–C motif chemokine 19	CHa vs control
101802287	TGFB3	Transforming growth factor beta-3	CHa vs control
101793182	CNTFR	Granulocyte–macrophage colony-stimulating factor receptor alpha	CHa vs control
101797327	FLT1	FMS-like tyrosine kinase 1	CHa vs control
101792543	FLT4	FMS-like tyrosine kinase 4	CHa vs control
101795963	IL22RA2	Interleukin 22 receptor alpha 2	CHa vs control
101802521	IL15	Interleukin 15	CHv vs control and CHa vs control
101803777	TNFSF13B	Tumor necrosis factor ligand superfamily member 13B	CHv vs control and CHa vs control
101797830	EGFR	Epidermal growth factor receptor	CHv vs control and CHa vs control
Apoptosis
101803461	PIK3CB	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta	CHv vs control
101793887	IL3RB	Cytokine receptor common subunit beta	CHv vs control
101801064	IKKA	Inhibitor of nuclear factor kappa-B kinase subunit alpha	CHv vs control and CHa vs control
101794069	CASP6	Caspase 6	CHv vs control and CHa vs control
Viral invasion
Cell surface-related receptor
101796910	HSPG2	Heparan sulfate proteoglycan 2	CHv vs control
101791819	HS3ST5	Heparan sulfate glucosamine 3-O-sulfotransferase 5	CHv vs control
Cell cytoskeletal-related protein
101805015	TUBA1C	Tubulin alpha-1C chain	CHv vs control
101805212	TUBA1B	Tubulin alpha-1B chain	CHv vs control
101801170	KIF14	Kinesin protein KIF14	CHa vs control
101793497	ACTA2	Actin, aortic smooth muscle	CHv vs control
101792376	ACTG2	Actin, gamma-enteric smooth muscle	CHv vs control and CHa vs control
101790019	AFAP1L2	Actin filament-associated protein 1-like 2	CHv vs control and CHa vs control
101799368	MYL9	Myosin light chain 9	CHv vs control and CHa vs control
101803563	MYH11	Myosin heavy chain 11	CHa vs control
Inner nuclear membrane-related protein
101797969	LMNA	Lamin A/C	CHv vs control and CHa vs control

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