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Table 1 Differentially expressed proteins of Y. ruckeri strains (SP-05, CSF007-82, 7959-11 and YRNC-10)

From: Shotgun proteomic analysis of Yersinia ruckeri strains under normal and iron-limited conditions

UniProt accession number Ambiguous accession number Protein Function SP-05 CSF007-82 7959-11 YRNC-10
Iron ion binding
 C4UM10_YERRU A0A0A8VIR2_YERRU Iron(III)-binding periplasmic protein Iron ion binding 22.3* 26* 25.5* 28.5*
 C4UKR8_YERRU A0A085U4N5_YERRU Iron ABC transporter substrate-binding protein Iron binding protein 17.4 35.0* 25.6* 18.8*
 C4UFX7_YERRU A0A085U819_YERRU Periplasmic chelated iron-binding protein yfeA Iron ion binding 4.1* 3.8* 3.3* 3.1
 C4UFT8_YERRU A0A085U7X7_YERRU Hemin receptor Iron receptor activity 4.4* 1.2 1.1 −1.0
 C4UHA0_YERRU A0A085U6V7_YERRU Bacterioferritin Ferric iron binding −3.0* −10.2* −9.5* −12.5*
 C4UGG9_YERRU A0A085UAC6_YERRU Iron-sulfur cluster assembly scaffold protein IscU Iron-sulfur cluster binding −3.7* −3.8* −3.6* −3.6*
Transport
 C4UFT9_YERRU A0A085U7X8_YERRU Hemin transport protein hemS Iron ion transport 96.2* 20.6* 17.3 13.6*
 C4UH16_YERRU A0A085U729_YERRU Ferrous iron transport protein A Ferrous iron import 4.2 6.8* 7.9* 6.6*
 C4UH15_YERRU A0A0A5FIY5_YERRU Ferrous iron transport protein B Ferrous iron transport −1.1 2.5 5.1* 2.1
 C4UFU0_YERRU A0A085U7X9_YERRU Hemin-binding periplasmic protein hmuT Iron transport 8.6 2.5 2.5 3.4*
 A0A094SXA9_YERRU A0A085UBN5_YERRU Fe(3+) ions import ATP-binding protein FbpC Ferric-transporting ATPase activity 2.7 3.4 3.1* 2.5
 C4UKR5_YERRU A0A0A8VKF9_YERRU TonB-dependent receptor plug Transport/Receptor activity 7.7 9.5* 4.5* 1.3
 C4UJT7_YERRU A0A085U605_YERRU Bacterial extracellular solute-binding s, 3 family protein Transporter activity 2.5 2.4 3.2* 3.1*
 A0A094TKG1_YERRU A0A085U820_YERRU ABC transporter family protein Transmembrane transport 3.9* 3.0 2.9 2.5
 A0A094SUN9_YERRU A0A085U4N3_YERRU ABC transporter family protein Transmembrane transport 5.4 4.7* 5.8* 6.8*
 A0A094SST2_YERRU A0A085U3C5_YERRU ABC transporter family protein Transmembrane transport 3.2* 2.8 4.8 2.9
 C4UK69_YERRU A0A085U6M5_YERRU Sec-independent protein translocase protein TatA Transporter activity −1.4 −1.6 −6.2 −7.0*
 C4UG32_YERRU A0A085U4W0_YERRU NADH dehydrogenase (Quinone), D subunit Transport −3.5* −3.0* −1.6 −1.7
 C4UHI5_YERRU A0A085U5C9_YERRU Acriflavine resistance protein A Drug transmembrane transport −3.7* −1.9 −1.3 −2.6
 C4UMG6_YERRU A0A085U472_YERRU Cytochrome d ubiquinol oxidase subunit 1 Electron transport coupled proton transport −3.7* −1.6 1.2 −1.4
 C4UEW4_YERRU A0A085U499_YERRU d-Galactose-binding periplasmic protein Carbohydrate transport −1.2 −3.3* −2.6 −2.2
  1. Differentially expressed proteins of Y. ruckeri strains under iron-limited conditions (Normal versus iron-limited conditions) were sorted by function. * denotes statistically significant difference according to both t-test with FDR-adjusted p value <0.05 and fold change < −3 or > +3.