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Table 1 Differentially expressed proteins of Y. ruckeri strains (SP-05, CSF007-82, 7959-11 and YRNC-10)

From: Shotgun proteomic analysis of Yersinia ruckeri strains under normal and iron-limited conditions

UniProt accession number

Ambiguous accession number

Protein

Function

SP-05

CSF007-82

7959-11

YRNC-10

Iron ion binding

 C4UM10_YERRU

A0A0A8VIR2_YERRU

Iron(III)-binding periplasmic protein

Iron ion binding

22.3*

26*

25.5*

28.5*

 C4UKR8_YERRU

A0A085U4N5_YERRU

Iron ABC transporter substrate-binding protein

Iron binding protein

17.4

35.0*

25.6*

18.8*

 C4UFX7_YERRU

A0A085U819_YERRU

Periplasmic chelated iron-binding protein yfeA

Iron ion binding

4.1*

3.8*

3.3*

3.1

 C4UFT8_YERRU

A0A085U7X7_YERRU

Hemin receptor

Iron receptor activity

4.4*

1.2

1.1

−1.0

 C4UHA0_YERRU

A0A085U6V7_YERRU

Bacterioferritin

Ferric iron binding

−3.0*

−10.2*

−9.5*

−12.5*

 C4UGG9_YERRU

A0A085UAC6_YERRU

Iron-sulfur cluster assembly scaffold protein IscU

Iron-sulfur cluster binding

−3.7*

−3.8*

−3.6*

−3.6*

Transport

 C4UFT9_YERRU

A0A085U7X8_YERRU

Hemin transport protein hemS

Iron ion transport

96.2*

20.6*

17.3

13.6*

 C4UH16_YERRU

A0A085U729_YERRU

Ferrous iron transport protein A

Ferrous iron import

4.2

6.8*

7.9*

6.6*

 C4UH15_YERRU

A0A0A5FIY5_YERRU

Ferrous iron transport protein B

Ferrous iron transport

−1.1

2.5

5.1*

2.1

 C4UFU0_YERRU

A0A085U7X9_YERRU

Hemin-binding periplasmic protein hmuT

Iron transport

8.6

2.5

2.5

3.4*

 A0A094SXA9_YERRU

A0A085UBN5_YERRU

Fe(3+) ions import ATP-binding protein FbpC

Ferric-transporting ATPase activity

2.7

3.4

3.1*

2.5

 C4UKR5_YERRU

A0A0A8VKF9_YERRU

TonB-dependent receptor plug

Transport/Receptor activity

7.7

9.5*

4.5*

1.3

 C4UJT7_YERRU

A0A085U605_YERRU

Bacterial extracellular solute-binding s, 3 family protein

Transporter activity

2.5

2.4

3.2*

3.1*

 A0A094TKG1_YERRU

A0A085U820_YERRU

ABC transporter family protein

Transmembrane transport

3.9*

3.0

2.9

2.5

 A0A094SUN9_YERRU

A0A085U4N3_YERRU

ABC transporter family protein

Transmembrane transport

5.4

4.7*

5.8*

6.8*

 A0A094SST2_YERRU

A0A085U3C5_YERRU

ABC transporter family protein

Transmembrane transport

3.2*

2.8

4.8

2.9

 C4UK69_YERRU

A0A085U6M5_YERRU

Sec-independent protein translocase protein TatA

Transporter activity

−1.4

−1.6

−6.2

−7.0*

 C4UG32_YERRU

A0A085U4W0_YERRU

NADH dehydrogenase (Quinone), D subunit

Transport

−3.5*

−3.0*

−1.6

−1.7

 C4UHI5_YERRU

A0A085U5C9_YERRU

Acriflavine resistance protein A

Drug transmembrane transport

−3.7*

−1.9

−1.3

−2.6

 C4UMG6_YERRU

A0A085U472_YERRU

Cytochrome d ubiquinol oxidase subunit 1

Electron transport coupled proton transport

−3.7*

−1.6

1.2

−1.4

 C4UEW4_YERRU

A0A085U499_YERRU

d-Galactose-binding periplasmic protein

Carbohydrate transport

−1.2

−3.3*

−2.6

−2.2

  1. Differentially expressed proteins of Y. ruckeri strains under iron-limited conditions (Normal versus iron-limited conditions) were sorted by function. * denotes statistically significant difference according to both t-test with FDR-adjusted p value <0.05 and fold change < −3 or > +3.
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Veterinary Research

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