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Table 1 Genetic diversity measured for all loci with DnaSP

From: Multilocus sequence analysis of Anaplasma phagocytophilum reveals three distinct lineages with different host ranges in clinically ill French cattle

  APH 1099-1100 Msp4 RecG PolA GyrA TypA GroESL PleD AnkA AnkAI AnkAII AnkAIII AnkAIV Mean
Nb indiv 98 136 88 79 54 114 100 63 101 34 6 16 45  
Length bp 435 390 351 333 837 462 630 597 654 661 753 710 702  
Nb site poly 19 38 12 21 20 27 35 27 352 47 22 36 74  
% site poly 3.37 9.74 3.41 6.30 2.39 5.84 5.55 4.52 53.82 7.11 2.92 5.07 10,54 6.575
Nb haplo 9 30 17 22 24 33 36 10 64 22 4 9 31  
Haplo Div (Hd) 0.565 0.875 0.807 0.838 0.93 0.86 0.923 0.661 0.983 0.961 0.8 0.908 0.958 0.827
Nucleo div (π) 0.0084 0.0237 0.0047 0.0106 0.0043 0.0087 0.01156 0.0168 0.2083 0.0176 0.0123 0.0076 0.0185 0.0178
Rm 1 7 1 5 6 7 7 2 NA 8 0 1 12  
  1. Nb indiv: number of samples analyzed by loci; Length bp: length of the alignment in bp; Nb site poly and % site poly: number and proportion of polymorphic sites in the alignment; Nb haplo: number of haplotypes; Hd: haplotype diversity; π: nucleotide diversity; and Rm: number of estimated recombination events.