| | |
Farm
|
|---|
| | |
Farm A
|
Farm B
|
Farm C
|
Farm D
|
|---|
|
MLVA cluster
|
Dominant MLVA type(s)a
|
# MLVA types in cluster
|
# isolates in cluster/total
|
# MLVA types in cluster
|
# isolates in cluster/total
|
# MLVA types in cluster
|
# isolates in cluster/total
|
# MLVA types in cluster
|
# isolates in cluster/total
|
|---|
|
A
|
32-46-38-38-2
|
9
|
113/135
|
-
|
-
|
-
|
-
|
-
|
-
|
|
B
|
33-57-37-7-3
|
-c
|
-
|
16
|
89/155
|
5
|
66/355
|
12
|
157/326
|
|
33-57-37-6-3
|
|
C
|
34-57-34-7-3
|
-
|
-
|
-
|
-
|
15
|
105/355
|
-
|
-
|
|
D
|
34-59-38-8-4
|
-
|
-
|
-
|
-
|
4
|
57/355
|
6
|
131/326
|
|
E
|
35-59-35-8-4
|
-
|
-
|
-
|
-
|
4
|
54/355
|
-
|
-
|
|
F
|
32-55-35-5-3
|
-
|
-
|
4
|
12/155
|
-
|
-
|
-
|
-
|
|
G
|
33-57-36-7-3
|
-
|
-
|
2
|
11/155
|
-
|
-
|
-
|
-
|
|
Other clustersb
| |
8
|
14/135
|
11
|
11/155
|
18
|
20/355
|
9
|
12/326
|
|
Non-clustered
| |
7
|
8/135
|
24
|
32/155
|
48
|
53/355
|
22
|
26/326
|
- aVNTR code of the repeat region of the 5 genes clf A, clf B, sdr C, sdr E, and SIRU21.
- bThere are 3, 5, 9, and 4 other clusters on farm A to D, respectively.
- c-: not detected on the farm.
- For each of the seven dominant clusters (=related MLVA types grouped together), the dominant MLVA type(s) is/are given. Per farm, the dominant cluster(s) is indicated. MLVA clusters containing less than 10 isolates were grouped as "other clusters" (3, 5, 9, and 4 clusters on farm A to D, respectively). Last, the number of isolates belonging to a non-clustered MLVA type is given. In addition, the number of MLVA types belonging to each cluster and the number of isolates per cluster are shown per farm.
