Genotyping of a microsatellite locus to differentiate clinical Ostreid herpesvirus 1 specimens

Table 2 Results obtained for each analysed specimen in terms of genotyping and DNA sequencing were grouped per year of collection

Specimen code	Genotyping	Number of repeats (CTA)	Detection frequency (%)	DNA sequencing
1993/002	152,19	8	34	151
1994/005	152,19	8	34	151
1994/006	152,18	8	34	151
1994/011	152,18	8	34	151
1994/012	152,19	8	34	151
1995/020	152,16	8	34	151
2005/001	152,23	8	34	151
2005/005	161,71	11	4.3	160
2005/012	152,27	8	34	151
2006/005	152,27	8	34	151
2006/009	164,88	12	2	163
2006/018	167,91	13	2	166
2007/004	152,35	8	34	151
2007/026	158,69	10	12.7	157
2007/028	161,82	11	4.3	160
2007/029	158,67	10	12.7	157
2007/030	152,18	8	34	151
2007/034	152,32	8	34	151
2007/035	152,32	8	34	151
2008/017	135,28	4	42.5	136
2008/019	158,56	10	12.7	157
2008/020	151,9	8	34	151
2008/021	158,72	10	12.7	157
2008/023	158,68	10	12.7	157
2008/025	158,65	10	12.7	157
2008/045	135,25	4	42.5	136
2008/050	135,18	4	42.5	136
2008/055	135,3	4	42.5	136
2008/059	135,17	4	42.5	136
2008/083	135,18	4	42.5	136
2008/092	135,21	4	42.5	136
2008/073	152,3	8	34	150
2008/079	152,32	8	34	151
2009/002	135,22	4	42.5	136
2009/021	135,14	4	42.5	136
2009/022	135,28	4	42.5	136
2009/027	135,29	4	42.5	136
2009/035	135,29	4	42.5	136
2010/002	135,29	4	42.5	136
2010/008	135,23	4	42.5	136
2010/012	135,24	4	42.5	136
2010/013	135,18	4	42.5	136
2010/021	135,31	4	42.5	136
2010/023	135,17	4	42.5	136
2010/026	135,24	4	42.5	136
2007/07-CB2	155,47	9	2	154
2010/158-144	135,17	4	42.5	136

Although several genotypes were reported the same year in 2005, 2006, 2007 and 2008, a single one was noticed the other years.

ISSN: 1297-9716