Improved strategy for phylogenetic analysis of classical swine fever virus based on full-length E2 encoding sequences

Table 4 Genetic variability of different regions within the CSFV genome.

			number of variable positions
analyzed region			all genotypes(n = 85)		genotype 2(n = 48)		subgenotype 2.3(n = 28)
name	position¹	size¹ [nt]	abs. [n]	rel. [%]	abs. [n]	rel. [%]	abs. [n]	rel. [%]
5´NTR frag.	200-349	150	39	26	28	19	14	9
N^pro	374-877	504	254	50	188	37	101	20
C	878-1174	297	139	47	107	36	52	18
E^rns	1175-1855	681	309	45	229	34	99	15
E1	1856-2440	585	261	45	179	31	82	14
E2	2441-3361	1119	543	49	424	38	221	20
E2 frag.	2518-2707	190	95	50	78	41	41	21
5´NTR - E2	200-3707	3508	1621	46	1202	34	589	17

ISSN: 1297-9716