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Table 1 GO term enrichment annotations for network clusters grouped into similar time-point expression profiles.

From: Temporal transcriptome profiling of floating apical out chicken enteroids suggest stability and reproducibility

Cluster

GO term no

Significantly-enriched GO term (p < 0.05)

p value

Genes in gene set

Genes in cluster

Genes in overlap

% overlap

High villi (0 day)

 1

7049

CELL_CYCLE

4.30E-63

1864

1190

175

9.388412

 1

51301

CELL_DIVISION

8.78E-36

598

1190

76

12.70903

 1

9893

POSITIVE_REGULATION_OF_MULTICELLULAR_ORGANISMAL_PROCESS

1.71E-29

1825

1190

123

6.739726

 1

15630

MICROTUBULE_CYTOSKELETON

6.93E-32

1220

1190

102

8.360656

 1

22008

NEUROGENESIS

2.92E-34

1625

1190

123

7.569231

 1

51276

CHROMOSOME_ORGANIZATION

3.53E-35

1223

1190

107

8.748978

 1

45595

REGULATION_OF_CELL_DIFFERENTIATION

1.52E-30

1881

1190

127

6.751728

 8

35295

TUBE_DEVELOPMENT

9.42E-10

1122

194

18

1.604278

 8

2520

IMMUNE_SYSTEM_DEVELOPMENT

1.05E-09

990

194

17

1.717172

 8

7517

MUSCLE_ORGAN_DEVELOPMENT

1.43E-07

407

194

10

2.457002

 20

43005

NEURON_PROJECTION

6.85E-08

1317

64

11

0.835232

 20

45202

SYNAPSE

5.74E-15

1332

64

17

1.276276

 20

7269

NEUROTRANSMITTER_SECRETION

2.17E-08

168

64

6

3.571429

 31

33002

MUSCLE_CELL_PROLIFERATION

1.01E-07

241

28

5

2.074689

 31

35265

ORGAN_GROWTH

2.76E-06

203

28

4

1.970443

High 0 h and 1 day

 10

43043

PEPTIDE_BIOSYNTHETIC_PROCESS

2.94E-91

736

159

73

9.918478

 10

6413

TRANSLATIONAL_INITIATION

6.11E-111

192

159

62

32.29167

 12

6396

RNA_PROCESSING

1.66E-10

917

131

16

1.74482

High 0 h and 3–7 day

 15

5768

ENDOSOME

1.10E-06

918

92

11

1.198257

 21

70160

TIGHT_JUNCTION

0.0000079 6

126

47

4

3.174603

 21

5912

ADHERENS_JUNCTION

0.0000238

169

47

4

2.366864

 21

43297

APICAL_JUNCTION_ASSEMBLY

3.57E-05

64

47

3

4.6875

 21

2520

IMMUNE_SYSTEM_DEVELOPMENT

4.65E-05

990

47

7

0.707071

 26

42582

AZUROPHIL_GRANULE

3.56E-06

155

36

4

2.580645

 26

46903

SECRETION

1.02E-05

1680

36

8

0.47619

 26

33043

REGULATION_OF_ORGANELLE_ORGANIZATION

1.59E-05

1267

36

7

0.552486

 21

7010

CYTOSKELETON_ORGANIZATION

4.03E-05

1335

47

8

0.599251

 28

44257

CELLULAR_PROTEIN_CATABOLIC_PROCESS

1.49E-06

782

34

7

0.895141

High 0 h and 7 day

 2

7049

CELL_CYCLE

2.09E-32

1864

824

110

5.901288

 2

51254

POSITIVE_REGULATION_OF_RNA_METABOLIC_PROCESS

9.94E-36

1710

824

110

6.432749

 2

51276

CHROMOSOME_ORGANIZATION

9.45E-33

1223

824

89

7.277187

 2

15630

MICROTUBULE_CYTOSKELETON

1.76E-22

1220

824

74

6.065574

 24

2521

LEUKOCYTE_DIFFERENTIATION

7.01E-14

520

44

11

2.115385

 24

2682

REGULATION_OF_IMMUNE_SYSTEM_PROCESS

3.44E-12

1670

44

14

0.838323

 24

46649

LYMPHOCYTE_ACTIVATION

8.65E-14

736

44

12

1.630435

  1. GO terms of interest were chosen to highlight the various biological processes occurring at each time-point