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Figure 4 | Veterinary Research

Figure 4

From: Evaluating the potential of whole-genome sequencing for tracing transmission routes in experimental infections and natural outbreaks of bovine respiratory syncytial virus

Figure 4

Cumulative Shannon diversity along the BRSV genome. Cumulative Shannon diversity along the BRSV genome is plotted for each of the 20 samples in the 500 × data set. A uniform distribution of diversity along the genome would produce a straight diagonal line. Base proportions less than 1% were assumed to be due to NGS error and set to zero. Gene positions are shown at the foot of each plot. Due to the omission of positions 1–578, including all of gene NS1, from sequencing (see Materials and methods), cumulative diversity begins at 579, at the 5’ end of gene NS2. The challenge virus from experiment G, BRSV/Sweden/HPIG-SLU-620-Lovsta/2016, is abbreviated to G_BRSVSweden620p4.

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