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Table 2 Alpha diversity metrics obtained from pooled NT and BALF samples of the three farms.

From: Influence of Mycoplasma hyopneumoniae natural infection on the respiratory microbiome diversity of finishing pigs

Group

Sample ID

OTUs

Faith

Shannon

Pielou

Simpson

M. hyopneumoniae-free (H1)

H1NT

710

356.93

3.37

0.35

0.64

H1BALF

182

63.08

3.79

0.50

0.87

M. hyopneumoniae-positive (H2 and H3)

H2NT

1120

533.08

4.18

0.41

0.79

H3NT

1131

552.68

5.04

0.49

0.84

H2BALF

1200

134.61

2.77

0.27

0.58

H3BALF

336

122.79

1.68

0.20

0.48