Table 1 NGS data and quality control obtained from pooled NT and BALF samples of the three farms.
Group | Sample type | Sample ID | OTUs | Number of reads |
|---|---|---|---|---|
M. hyopneumoniae-free (H1) | NT | H1NT | 790 | 590 252 |
BALF | H1BALF | 182 | 181 176 | |
M. hyopneumoniae-positive (H2 and H3) | NT | H2NT | 1384 | 1 242 750 |
H3NT | 1218 | 705 578 | ||
BALF | H2BALF | 1585 | 1 914 416 | |
H3BALF | 481 | 1 229 248 |