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Table 1 KEGG pathways altered in ST416/ST417

From: Genomic signatures of host adaptation in group B Salmonella enterica ST416/ST417 from harbour porpoises

Pathway Pathway name Pan-genome SNP
stm01100 Metabolic pathways 46 30
stm01120 Microbial metabolism in diverse environments 35 9
stm02020 Two-component system 20 9
stm05132 Salmonella infection 13 5
stm02060 Phosphotransferase system (PTS) 12
stm01110 Biosynthesis of secondary metabolites 12 7
stm03070 Bacterial secretion system 12
stm00350 Tyrosine metabolism 10 2
stm00030 Pentose phosphate pathway 9
stm01220 Degradation of aromatic compounds 7
stm01200 Carbon metabolism 6 2
stm02024 Quorum sensing 6
stm02010 ABC transporters 5 5
stm00051 Fructose and mannose metabolism 5 4
stm00520 Amino sugar and nucleotide sugar metabolism 5 4
stm00910 Nitrogen metabolism 5
stm00010 Glycolysis/gluconeogenesis 5
stm01230 Biosynthesis of amino acids 4
stm00310 Lysine degradation 4 3
stm05100 Bacterial invasion of epithelial cells 3
stm00330 Arginine and proline metabolism 3
stm00630 Glyoxylate and dicarboxylate metabolism 3 2
stm00650 Butanoate metabolism 3 2
stm00680 Methane metabolism 3 2
stm00620 Pyruvate metabolism 3
stm00260 Glycine, serine and threonine metabolism 3
stm03430 Mismatch repair 3
stm00760 Nicotinate and nicotinamide metabolism 3
stm00250 Alanine, aspartate and glutamate metabolism 3
stm01503 Cationic antimicrobial peptide (CAMP) resistance - 3
stm03010 Ribosome 2
stm00071 Fatty acid degradation 2
stm00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
stm00633 Nitrotoluene degradation 2
stm00640 Propanoate metabolism 2
stm00500 Starch and sucrose metabolism 2 4
stm02030 Bacterial chemotaxis 2 -
stm00564 Glycerophospholipid metabolism 2
stm00562 Inositol phosphate metabolism 2
stm00541 O-Antigen nucleotide sugar biosynthesis 2
stm00540 Lipopolysaccharide biosynthesis 2
stm02060 Phosphotransferase system (PTS) 2
stm00052 Galactose metabolism 2
stm00230 Purine metabolism 2
  1. KEGG pathways significantly enriched for presence/absence variation in isolates of ST416/ST417 compared to the S. enterica type strain LT2 as determined by pan-genome analysis and identification of high impact (i.e., presumed loss of function) SNPs.