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Table 3 S-type specific virulence factor genes

From: Genomic diversity of Mycobacterium avium subsp. paratuberculosis: pangenomic approach for highlighting unique genomic features with newly constructed complete genomes

Cluster Predicted function Ortholog virulence factor Database Reference Identity (%) Note
31 Nonribosomal peptide synthetase, partial [WP_019730007.1] VFG009488(gi:41408271) (mbtE) MbtE [Mycobactin (CVF315)] VFDB Mycobacterium avium subsp. paratuberculosis K-10 99.2 Only in S
442 GMC family oxidoreductase [WP_003874392.1] fig|83332.12.peg.3806|Rv3409c|VBIMycTub87468_3806| Cholesterol oxidase (EC 1.1.3.6) @ Steroid Delta(5)→Delta(4)-isomerase (EC 5.3.3.1) PATRIC Mycobacterium tuberculosis H37Rv 87.2 Only in S
510 AMP-binding protein [WP_003875986.1] VFG009545(gi:118462251) (mbtA) 2,3-dihydroxybenzoate-AMP ligase [Mycobactin (CVF315)] VFDB Mycobacterium avium 104 99.3 Only in S
1170 Glycosyltransferase [WP_003876129.1] VFG029573(gi:118465574) (gtf1) glycosyl transferase [GPL locus (CVF650)] VFDB Mycobacterium avium 104 98.6 Only in S
1221 Glycosyltransferase [WP_003876135.1] VFG029631(gi:118466342) (gtf2) glycosyltransferase 28 [GPL locus (CVF650)] VFDB Mycobacterium avium 104 98.8 Only in S
1841 NAD-dependent epimerase/dehydratase family protein [WP_016706194.1] VFG029546(gi:118464065) (rmlB) NAD dependent epimerase/dehydratase [GPL locus (CVF650)] VFDB Mycobacterium avium 104 99.7 Only in S
2721 Class I SAM-dependent methyltransferase [WP_031350157.1] VFG029564(gi:387876472) (rmt4) macrocin-O-methyltransferase [GPL locus (CVF650)] VFDB Mycobacterium intracellulare str. MOTT36Y 90.5 Only in S
2849 Class I SAM-dependent methyltransferase [WP_029245480.1] VFG029626(gi:523914475) (rmt3) MtfD protein [GPL locus (CVF650)] VFDB Mycobacterium yongonense 05-1390 92.9 Only in S
2857 Class I SAM-dependent methyltransferase [WP_009977502.1] VFG029564(gi:387876472) (rmt4) macrocin-O-methyltransferase [GPL locus (CVF650)] VFDB Mycobacterium intracellulare str. MOTT36Y 85.5 Only in S
5731 Acyl carrier protein [WP_019306489.1] VFG021806(gi:118462750) (MAV_2873) acyl carrier protein [Mycobactin (CVF315)] VFDB Mycobacterium avium 104 97 Only in S
23 MbtE [AAS04490.1] VFG009488(gi:41408271) (mbtE) MbtE [Mycobactin (CVF315)] VFDB Mycobacterium avium subsp. paratuberculosis K-10 100 Not in S
1384 AMP-binding protein [WP_003875986.1] VFG009544(gi:41408276) (mbtA) MbtA [Mycobactin (CVF315)] VFDB Mycobacterium avium subsp. paratuberculosis K-10 100 Not in S