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Table 1 Detailed information on the discovered tandem repeats during gap analysis

From: Genomic diversity of Mycobacterium avium subsp. paratuberculosis: pangenomic approach for highlighting unique genomic features with newly constructed complete genomes

Name of TR

Position of tandem repeats on M. avium subsp. paratuberculosis (K-10) genome

Length of TR (bp)

Sequence of TR

Start

Stop

MAPK_TR_1

83 156

83 195

20

AATTAACGATATCGAATTTG

MAPK_TR_2

127 386

127 400

15

CCGCCGACCAGCTCT

MAPK_TR_3

703 849

703 948

57

ACGACCATTAAACAAGGAGTGATCGCGAGCGCGGGCGAAGCCCGGGTGAAGCGGGTC

MAPK_TR_4

1 798 372

1 798 524

51

CCCGGCGGCGGCGGTGGCAGCATCCCCGGTGGCCCGACCGGTGGCGGCGGC

MAPK_TR_5

2 156 149

2 156 235

21

CGCCGCGCCCGTCGAGCGTCA

MIRU292

3 253 654

3 253 812

53

GTCATCTGCGCCGCTCCTCCTCATCGCTGCGCTCTGCATCGTCGTCGGCGCGA

VNTR25

3 665 698

3 665 855

58

CTCCTGCGCATCCCGCTGCGCGGAATGCTTCGTCGCCGGGCTCCACCCCAATCACCCA

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Veterinary Research

ISSN: 1297-9716