Table 1 Most highly differentially expressed transcripts (top 50) comparing zero and eight hours post Salmonella infection in primary porcine neutrophils
Gene symbol | Refseq ID | Source | Average expression level (log2) | Fold change | q-value |
|---|---|---|---|---|---|
SLC10A1 | XM_001927695 | Pig | 10.8304 | − 83.4142 | 2.69E−05 |
MME | XM_003132501 | Pig | 12.6772 | − 56.4129 | 2.69E−05 |
DOCK4 | XM_021079281 | Pig | 11.1479 | − 38.564 | 2.69E−05 |
NDUFB2 | NM_001244885 | Pig | 13.3140 | 30.25678 | 2.69E−05 |
ABI3 | XM_003358086 | Pig | 10.6394 | − 22.1323 | 2.69E−05 |
CHI3L1 | NM_001001540 | Pig | 12.4107 | − 20.9822 | 2.69E−05 |
avrA | – | Salmonella | 12.7307 | 16.48907 | 4.81E−05 |
R3HCC1 | XM_021073022 | Pig | 10.9036 | − 11.121 | 4.81E−05 |
H2AFY2 | XM_021073865 | Pig | 12.9446 | 10.55971 | 4.81E−05 |
SIPA1L1 | XM_005656372 | Pig | 11.3501 | − 7.87188 | 4.81E−05 |
sseF | – | Salmonella | 14.2728 | 14.12313 | 4.82E−05 |
flgM | – | Salmonella | 6.4344 | − 7.50741 | 4.82E−05 |
CRYBB3 | XM_001929473 | Pig | 10.4932 | − 23.3897 | 5.71E−05 |
PLOD2 | XM_021069587 | Pig | 13.0709 | 128.5496 | 6.07E−05 |
DOCK10 | XM_003133687 | Pig | 10.1372 | − 23.3319 | 6.07E−05 |
CCDC146 | XM_021102558 | Pig | 11.1119 | − 10.1757 | 6.07E−05 |
SCAPER | XM_021099012 | Pig | 13.1531 | 9.680022 | 6.07E−05 |
AGO3 | NM_001194974 | Pig | 12.5285 | 7.508506 | 6.07E−05 |
HCAR3 | XM_021072989 | Pig | 13.6520 | − 19.7964 | 6.27E−05 |
DAB2 | XM_021076649 | Pig | 14.9437 | 55.62877 | 6.35E−05 |
RPS11 | NM_001244070 | Pig | 8.0332 | − 8.02668 | 6.35E−05 |
rplE | – | Salmonella | 9.0468 | 16.20982 | 6.46E−05 |
FAAH | NM_213914 | Pig | 10.5260 | − 14.8085 | 8.45E−05 |
TP53 | NM_213824 | Pig | 13.3047 | 8.240427 | 8.59E−05 |
TMEM62 | XM_021097051 | Pig | 10.7321 | − 12.6827 | 8.86E−05 |
HIF1AN | XM_003125588 | Pig | 10.9592 | − 12.4298 | 9.13E−05 |
QPCT | XM_003481245 | Pig | 12.9645 | − 12.6145 | 9.82E−05 |
MIIP | NM_001244704 | Pig | 12.8614 | 9.137871 | 0.000101 |
sseD | – | Salmonella | 13.2127 | 22.39497 | 0.000112 |
PRIM1 | NM_001243669 | Pig | 12.3116 | 14.28129 | 0.000112 |
ERLEC1 | XM_003125147 | Pig | 12.7536 | 11.4634 | 0.000112 |
CCDC40 | XM_021066501 | Pig | 10.7968 | − 11.3155 | 0.000112 |
SLC39A8 | XM_013979001 | Pig | 11.7795 | 8.270433 | 0.000112 |
pyrH | – | Salmonella | 8.7281 | 21.67902 | 0.000116 |
RPL9 | NM_001243481 | Pig | 6.2471 | − 10.9441 | 0.000116 |
ACADM | NM_214039 | Pig | 11.2439 | 6.03635 | 0.000116 |
FBXL5 | XM_013978532 | Pig | 13.1740 | − 35.0706 | 0.000127 |
OSGIN2 | XM_001925927 | Pig | 12.3345 | − 7.16605 | 0.000127 |
KIAA1551 | NM_001243821 | Pig | 12.9331 | − 20.2392 | 0.000132 |
PLEKHO1 | XM_005655399 | Pig | 11.8700 | − 8.81157 | 0.000143 |
RPL39 | XM_005673863 | Pig | 6.6511 | − 8.66867 | 0.000143 |
sopB | – | Salmonella | 15.0980 | 18.36901 | 0.000143 |
CD69 | NM_214091 | Pig | 10.0376 | − 9.70064 | 0.000143 |
SERBP1 | XM_003127934 | Pig | 11.5299 | 8.12229 | 0.000143 |
TMEM164 | XM_021080001 | Pig | 11.4298 | − 7.43192 | 0.000143 |
TMEM123 | XM_005667282 | Pig | 10.0643 | − 77.2179 | 0.000146 |
MACF1 | XM_021095983 | Pig | 13.7886 | 12.70162 | 0.00015 |
RPL6 | NM_001044542 | Pig | 6.3390 | − 7.44624 | 0.00015 |
MED7 | NM_001044615 | Pig | 13.3926 | 11.76379 | 0.000157 |
LSM8 | XM_003134753 | Pig | 11.1819 | 5.565953 | 0.000159 |