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Table 4 Single nucleotide polymorphisms (SNPs) used for minimum core sequencing (MCG).

From: Population structure, genetic diversity and pathotypes of Streptococcus suis isolated during the last 13 years from diseased pigs in Switzerland

  1. MCG groups as defined by Zheng et al. [42] including 5 novel MCG groups identified in the present study. Red highlights discriminative SNPs for each SNP profile.
  2. aReference genome: strain GZ1 (GenBank accession number: CP000837).
  3. bEpidemic (E) strains (ST7 strains) identified by Zheng et al. [42].
  4. cUngroupable.
  5. The following isolates resulted in novel MCG groups with a new SNP profile.
  6. dMB1158 (cps type 5), MB1497, SS2097 (cps type 9), PP106 (cps type 19), MB1185 (cps type 21), SS921 (nontypeable).
  7. eMB1629 (cps type 12).
  8. fHuman pathogen strain (cps type 14).
  9. gMB 1297 (cps type 31).
  10. hSS 3919 (cps type 31).
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Veterinary Research

ISSN: 1297-9716