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Table 1 General genome features.

From: Genetic diversity and population structure of Tenacibaculum maritimum, a serious bacterial pathogen of marine fish: from genome comparisons to high throughput MALDI-TOF typing

Strain Country Host Tissue Date of isolation Technology Reads (post-trimming) Contigs (> 2000pb) Total length GC  % Coverage Number of predicted genomic islands SNPs vs. NCIMB 2154T Predicted CDS Genbank Assembly
NCIMB 2154T Japan Pagrus major Skin 1977 [20] n/a 1 3453 971 32.01 1734 29 0 2774 GCA_900119795.1
TM-KORJJ Korea Paralichthys olivaceus n/a n/a PacBio n/a 1 3333 272 31.98 300 24 15 049 2735 GCA_004803875.1
NBRC 15946 Japan n/a n/a n/a HiSeq n/a 96 3 240 791 31.80 123 20 10 084 2692 GCA_000509405.1
P1-39 France Dicentrarchus labrax Liver 2010 HiSeq (2 × 100 bp) 56 562 140 104 3 337 690 31.79 93 23 15 401 2788 GCA_902705535
P4-45 France Dicentrarchus labrax Skin 2010 HiSeq (2 × 100 bp) 54 681 392 73 3 349 546 31.81 70 27 15 707 2843 GCA_902705495 
902 France Dicentrarchus labrax Skin 2013 HiSeq (2 × 100 bp) 88 844 854 68 3 372 337 31.80 85 24 15 521 2851 GCA_902705365
Aq16-85 French Polynesia Platax orbicularis Skin 2016 MiSeq (2 × 300 bp) 2 174 369 43 3 198 696 31.88 220 21 14 929 2664 GCA_902705305
Aq16-88 French Polynesia Platax orbicularis Skin 2016 MiSeq (2 × 300 bp) 3 434 486 45 3 196 671 31.88 301 21 14 966 2665 GCA_902705275 
Aq16-89 French Polynesia Platax orbicularis Skin 2016 MiSeq (2 × 300 bp) 2 156 781 45 3 196 642 31.89 171 21 14 914 2666 GCA_902705375
TFA4 French Polynesia Platax orbicularis Skin 2013 MiSeq (2 × 300 bp) 2 369 550 66 3 356 632 31.82 226 33 14 961 2865 GCA_902705565 
FS08(1) Italy Sparus aurata Skin 2006 MiSeq (2 × 300 bp) 1 256 466 54 3 399 437 31.81 87 30 4424 2866 GCA_902705395
NAC SLCC MFF Malta Dicentrarchus labrax Skin 1995 MiSeq (2 × 300 bp) 1 091 150 80 3 352 671 31.81 76 29 40 598 2795 GCA_902705345
USC SP9.1 Spain Salmo salar Skin 1993 MiSeq (2 × 300 bp) 727 120 80 3 395 385 31.84 46 30 31 252 2779 GCA_902705515
DPIF 89/3001-6.2 Tasmania Latris lineata Skin 1989 MiSeq ( 2 × 300 bp) 1 019 320 129 3 448 890 31.77 66 33 26 962 2788 GCA_902705315
DPIF 89/0239-1 Tasmania Salmo salar Skin 1989 MiSeq (2 × 300 bp) 1 496 188 55 3 353 931 31.90 92 28 17 743 2773 GCA_902705355
USC SE30.1 Spain Oncorhynchus kisutch Mouth 1993 MiSeq (2 × 300 bp) 749 406 111 3 544 405 31.75 52 30 31 928 2928 GCA_902705525
UCD SB2 California Atractoscion nobilis n/a 1995 MiSeq (2 × 300 bp) 1 323 140 50 3 308 376 31.91 85 23 17 064 2715 GCA_902705445
JIP 32/91-4 France Dicentrarchus labrax Skin 1991 MiSeq (2 × 300 bp) 1 031 822 59 3 447 003 31.80 59 31 17 265 2872 GCA_902705385 
CVI1001048 Holland Solea solea Skin 2010 MiSeq (2 × 300 bp) 1 242 180 42 3224 047 31.94 90 16 1659 2670 GCA_902705265
FC Chile Scophthalmus maximus Eye 1998 MiSeq (2 × 300 bp) 1086 816 57 3 505 634 32.01 70 27 16 571 2921 GCA_902705415
P2-48 France Solea senegalensis Skin 2010 MiSeq (2 × 300 bp) 1 349 672 55 3 418 994 31.86 90 34 43 607 2910 GCA_902705555
P2-27 Spain Scophthalmus maximus Skin 2011 MiSeq (2 × 300 bp) 1 087 036 88 3 371 677 31.82 76 24 19 639 2821 GCA_902705465
JIP 46/00 France Scophthalmus maximus Skin 2000 MiSeq (2 × 300 bp) 1 155 334 56 3 371 335 31.89 73 25 17 215 2781 GCA_902705435
JIP 10/97 France Scophthalmus maximus Skin 1997 MiSeq (2 × 300 bp) 1 345 346 52 3 333 073 31.86 86 22 17 441 2746 GCA_902705285
NCIMB 2158 Scotland Solea solea Skin 1981 MiSeq (2 × 300 bp) 1 138 826 74 3 369 590 31.87 79 28 17 387 2797 GCA_902705425
  1. The list of contributors is available in Additional file 1.
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Veterinary Research

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