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Table 2 Analyses of virulence in ovo, in vivo and substituting mutations in HA and NA glycoproteins described to increase virulence of H9Nx strains in the chicken host [19]

From: Comparison of pathogenicity of subtype H9 avian influenza wild-type viruses from a wide geographic origin expressing mono-, di-, or tri-basic hemagglutinin cleavage sites

Strains/isolates

Subtypes

Deduced HACS sequence

Virulencea in ovo

In vivo (IVPI)

HA

NA

Motif-P6 to -P1

Motif type

E198A

Q234L

E502D

V33M

BD_11749

H9N2

PAKSKR

Tribasic

20

0

A

L

E

M

BD_11758

N/D

N/D

A

L

Q

M

BD_11760

N/D

N/D

A

L

E

M

BD_11787

N/D

N/D

A

Q

E

M

IN_117

20

N/D

A

L

E

M

IN_3535

N/D

N/D

A

L

Q

M

IN_118

H9N2

PARSSR

Dibasic-1

17

0

A

L

E

M

IN_119

N/D

N/D

A

L

E

M

IN_3532

N/D

N/D

A

L

E

M

IN_3533

N/D

N/D

A

L

E

M

EG_536

17

N/D

A

L

E

M

BD_VP01

H9N2

PAKSSR

Dibasic-2

8

0

A

L

E

M

BD_3534

N/D

N/D

A

L

E

M

DU_120

H9N2

QARSSR

Dibasic-3

N/D

N/D

A

Q

E

M

DU_121

H9N2

HARSSR

Dibasic-4

2

N/D

T

L

E

M

MO_166

2

0

T

R

E

M

SA_1885

N/D

N/D

T

L

E

M

DE_3280

H9N2

PAASKR

Dibasic-5

N/D

N/D

E

Q

E

M

DE_234

H9N2

PAASNR

Monobasic-1

2

N/D

E

Q

E

M

DE_143

H9N3

N/D

N/D

E

Q

E

N/A

DE_144

H9N3

N/D

N/D

E

Q

E

N/A

DE_142

H9N8

PAASSR

Monobasic-2

2

0

E

Q

E

N/A

Mockb

N/A

N/A

N/A

0

N/A

N/A

N/A

N/A

N/A

  1. Italicized font indicates the basic amino acids.
  2. N/D: not determined, N/A: not applicable.
  3. aVirulence was tested by semi-quantifying viral spread in embryonic tissues. The values represent a cumulative score based on immunohistochemical investigation of 17 different tissues; higher values indicate extended tissue spread. See Additional file 5 for scoring details.
  4. bSPF allantoic fluid.