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Table 3 Short hairpin RNA (shRNA) sequences

From: Antiviral activity of ISG15 against classical swine fever virus replication in porcine alveolar macrophages via inhibition of autophagy by ISGylating BECN1

shRNA

Sequence (5′–3′)

shISG15-1-F

GATCCGACCAGTTCTGGCTGACTTTCCAAGAGGAAAGTCAGCCAGAACTGGTCTTTTTG

shISG15-1-R

AATTCAAAAAGACCAGTTCTGGCTGACTTTCCTCTTGGAAAGTCAGCCAGAACTGGTCG

shISG15-2-F

GATCCGCCTATGTGCACCGTGTATATCAAGAGATATACACGGTGCACATAGGCTTTTTG

shISG15-2-R

AATTCAAAAAGCCTATGTGCACCGTGTATATCTCTTGATATACACGGTGCACATAGGCG

shISG15-3-F

GATCCGTGCACCGTGTATATGAATCTCAAGAGAGATTCATATACACGGTGCACTTTTTG

shISG15-3-R

AATTCAAAAAGTGCACCGTGTATATGAATCTCTCTTGAGATTCATATACACGGTGCACG

shUSP18-1-F

GATCCGGTCGGTTTGCACAACATTGGCAAGAGCCAATGTTGTGCAAACCGACCTTTTTG

shUSP18-1-R

AATTCAAAAAGGTCGGTTTGCACAACATTGGCTCTTGCCAATGTTGTGCAAACCGACCG

shUSP18-2-F

GATCCGCCTTAACTCCCTGATTCAGGCAAGAGCCTGAATCAGGGAGTTAAGGCTTTTTG

shUSP18-2-R

AATTCAAAAAGCCTTAACTCCCTGATTCAGGCTCTTGCCTGAATCAGGGAGTTAAGGCG

shUSP18-3-F

GATCCGCCTACTGTCTCCAGAAGTACCAAGAGGTACTTCTGGAGACAGTAGGCTTTTTG

shUSP18-3-R

AATTCAAAAAGCCTACTGTCTCCAGAAGTACCTCTTGGTACTTCTGGAGACAGTAGGCG

  1. Underlines show loop ring.