Table 1 Performance of subsampling strategies and the scenario in which all available genetic samples were used (“All” strategy) in the phylodynamic analysis
From: Assessing biases in phylodynamic inferences in the presence of super-spreaders
Strategy | Percent bias | Percent error | HPD size | Coverage (%) | Convergence (%) |
|---|---|---|---|---|---|
All | 0.05 (−7.7, 6.6) | 6.87 (0.23, 30.6) | 37.5 (10.3, 77.5) | 91 | 59 |
Equal | −1.66 (−10.5, 6.4) | 8.13 (0.6, 24.7) | 52.0 (20.0, 93.3) | 98 | 93 |
Random | −1.54 (−8.2, 4.3) | 6.94 (0.28, 29.2) | 56.9 (19.5, 100.3) | 99 | 92 |
Herd infected | 0.58 (−7.0, 4.9) | 5.84 (0.34, 22.6) | 58.8 (25.4, 88.5) | 99 | 95 |
Herd | 0.02 (−10.0, 4.9) | 7.22 (0.21, 26.5) | 55.7 (24.2, 91.8) | 99 | 93 |