Skip to main content

Table 1 List of upregulated posterior intestine proteins of rainbow trout in response to Yersinia ruckeri strains

From: Modulation of posterior intestinal mucosal proteome in rainbow trout (Oncorhynchus mykiss) after Yersinia ruckeri infection

Accession Refseq

Protein name

Number of quantified peptides

Biological process

Intestine in response to Y. ruckeri strain

3 dpe (fold change)

9 dpe (fold change)

28 dpe (fold change)

XP_021441860.1

Probable serine carboxypeptidase CPVL

6

Serine-type carboxypeptidase activity

Biotype 1

3.6*

−1.7

1.4

Biotype 2

4.9*

−1.3

1.4

XP_021462823.1

Dipeptidase 1

6

Metallodipeptidase activity

Biotype 1

2.1*

1.3

−1.0

Biotype 2

2.7*

1.5

−1.2

XP_021442206.1

Xaa-Pro dipeptidase

6

Metallopeptidase activity

Biotype 1

2.4*

−1.1

1.2

Biotype 2

3.1*

1.1

1.2

XP_021437213.1

Dipeptidyl peptidase 1

5

Cysteine-type endopeptidase activity

Biotype 1

1.8

1.2

1.9

Biotype 2

2.3*

1.3

1.5

XP_021460613.1

Cathepsin D isoform X1

6

Aspartic-type endopeptidase activity

Biotype 1

2.4*

−1.1

1.2

Biotype 2

3.2*

1.1

1.2

XP_021427100.1

Pro-cathepsin H

5

Aminopeptidase activity

Biotype 1

4.3*

−2.0

1.3

Biotype 2

6.3*

−1.3

1.0

XP_021430445.1

Cathepsin L1

6

Cysteine-type endopeptidase activity

Biotype 1

4.3*

−2.4

1.3

Biotype 2

5.9*

−1.4

1.1

XP_021430112.1

Acid phosphatase type 7

6

Acid phosphatase activity

Biotype 1

2.5*

1.1

1.8

Biotype 2

4.4*

1.7

1.3

XP_021457257.1

Lysozyme C II

5

Hydrolase activity

Biotype 1

2.6*

2.2*

1.4

Biotype 2

2.8*

1.6

1.1

XP_021478264.1

Macrophage mannose receptor 1

5

Endocytosis

Biotype 1

3.2*

−1.1

1.3

Biotype 2

4.7*

1.4

1.2

XP_021446773.1

Eosinophil peroxidase

6

Peroxidase activity

Biotype 1

3.2*

−1.2

−1.1

Biotype 2

1.6

−1.4

−1.2

XP_021424232.1

Thioredoxin reductase 1

4

Redox homeostasis

Biotype 1

1.7

1.1

1.1

Biotype 2

2.2*

1.0

1.1

XP_021412083.1

Lysosomal alpha-mannosidase

6

Alpha-mannosidase activity

Biotype 1

2.8*

−1.8

1.4

Biotype 2

4.8*

1.1

1.3

NP_001154031.1

Glutathione S-transferase A

6

Glutathione metabolic process

Biotype 1

1.7

1.1

−1.0

Biotype 2

2.0*

1.2

−1.0

XP_021460921.1

Peroxisomal multifunctional enzyme type 2

6

Oxidoreductase activity

Biotype 1

2.0*

1.1

−1.0

Biotype 2

2.4*

1.0

−1.0

XP_021475660.1

Endoplasmic reticulum aminopeptidase 1

4

Aminopeptidase activity

Biotype 1

1.8

1.2

1.0

Biotype 2

2.2*

1.0

−1.0

NP_001117743.1

Caspase 6 precursor

2

Apoptotic process

Biotype 1

2.2*

−1.1

1.2

Biotype 2

2.1*

−1.2

−1.1

XP_021477916.1

Interferon-induced GTP-binding protein Mx2

5

GTPase activity

Biotype 1

2.0

1.3

−1.1

Biotype 2

2.4*

1.3

−1.3

XP_021468639.1

Gamma-interferon-inducible lysosomal thiol reductase

3

Antigen processing and presentation

Biotype 1

3.0*

−1.9

1.4

Biotype 2

4.4*

−1.1

1.3

XP_021466891.1

Precerebellin-like protein

5

Response to lipopolysaccharide

Biotype 1

2.9*

5.3*

2.0

Biotype 2

2.2

3.3*

1.3

XP_021453615.1

Calretinin-like

6

Calcium ion binding

Biotype 1

2.5*

1.5

1.2

Biotype 2

3.0*

1.6

1.0

XP_021426220.1

Regucalcin

6

Calcium ion binding

Biotype 1

2.1

1.0

1.4

Biotype 2

3.1*

1.2

1.1

XP_021480508.1

Ras-related protein Rab-5C

4

GTPase activity

Biotype 1

1.7

1.0

1.3

Biotype 2

2.4*

1.1

1.0

XP_021477941.1

Fructose-1,6-bisphosphatase 1

3

Carbohydrate metabolic process

Biotype 1

3.8*

1.4

1.0

Biotype 2

2.2

1.0

−1.2

XP_021434786.1

Beta-hexosaminidase

2

Carbohydrate metabolic process

Biotype 1

2.4*

−1.5

−1.0

Biotype 2

2.5*

−1.1

1.2

XP_021467816.1

Alpha-N-acetylgalactosaminidase

6

Carbohydrate metabolic process

Biotype 1

3.0*

−1.3

1.2

Biotype 2

4.1*

1.1

1.3

  1. Fold change was statistically analyzed in the posterior intestine of rainbow trout exposed to Y. ruckeri biotype 1 (CSF007-82) and biotype 2 (A7959-11) versus control posterior intestine of rainbow trout samples (n = 3 per time point).
  2. * Statistically significant difference according to both ANOVA and post hoc Tukey’s HSD with FDR-adjusted p-value < 0.05 and fold change < −2 or > +2. (Full table is presented in Additional file 4).
Back to article page

Veterinary Research

ISSN: 1297-9716