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Table 1 List of upregulated posterior intestine proteins of rainbow trout in response to Yersinia ruckeri strains

From: Modulation of posterior intestinal mucosal proteome in rainbow trout (Oncorhynchus mykiss) after Yersinia ruckeri infection

Accession Refseq Protein name Number of quantified peptides Biological process Intestine in response to Y. ruckeri strain 3 dpe (fold change) 9 dpe (fold change) 28 dpe (fold change)
XP_021441860.1 Probable serine carboxypeptidase CPVL 6 Serine-type carboxypeptidase activity Biotype 1 3.6* −1.7 1.4
Biotype 2 4.9* −1.3 1.4
XP_021462823.1 Dipeptidase 1 6 Metallodipeptidase activity Biotype 1 2.1* 1.3 −1.0
Biotype 2 2.7* 1.5 −1.2
XP_021442206.1 Xaa-Pro dipeptidase 6 Metallopeptidase activity Biotype 1 2.4* −1.1 1.2
Biotype 2 3.1* 1.1 1.2
XP_021437213.1 Dipeptidyl peptidase 1 5 Cysteine-type endopeptidase activity Biotype 1 1.8 1.2 1.9
Biotype 2 2.3* 1.3 1.5
XP_021460613.1 Cathepsin D isoform X1 6 Aspartic-type endopeptidase activity Biotype 1 2.4* −1.1 1.2
Biotype 2 3.2* 1.1 1.2
XP_021427100.1 Pro-cathepsin H 5 Aminopeptidase activity Biotype 1 4.3* −2.0 1.3
Biotype 2 6.3* −1.3 1.0
XP_021430445.1 Cathepsin L1 6 Cysteine-type endopeptidase activity Biotype 1 4.3* −2.4 1.3
Biotype 2 5.9* −1.4 1.1
XP_021430112.1 Acid phosphatase type 7 6 Acid phosphatase activity Biotype 1 2.5* 1.1 1.8
Biotype 2 4.4* 1.7 1.3
XP_021457257.1 Lysozyme C II 5 Hydrolase activity Biotype 1 2.6* 2.2* 1.4
Biotype 2 2.8* 1.6 1.1
XP_021478264.1 Macrophage mannose receptor 1 5 Endocytosis Biotype 1 3.2* −1.1 1.3
Biotype 2 4.7* 1.4 1.2
XP_021446773.1 Eosinophil peroxidase 6 Peroxidase activity Biotype 1 3.2* −1.2 −1.1
Biotype 2 1.6 −1.4 −1.2
XP_021424232.1 Thioredoxin reductase 1 4 Redox homeostasis Biotype 1 1.7 1.1 1.1
Biotype 2 2.2* 1.0 1.1
XP_021412083.1 Lysosomal alpha-mannosidase 6 Alpha-mannosidase activity Biotype 1 2.8* −1.8 1.4
Biotype 2 4.8* 1.1 1.3
NP_001154031.1 Glutathione S-transferase A 6 Glutathione metabolic process Biotype 1 1.7 1.1 −1.0
Biotype 2 2.0* 1.2 −1.0
XP_021460921.1 Peroxisomal multifunctional enzyme type 2 6 Oxidoreductase activity Biotype 1 2.0* 1.1 −1.0
Biotype 2 2.4* 1.0 −1.0
XP_021475660.1 Endoplasmic reticulum aminopeptidase 1 4 Aminopeptidase activity Biotype 1 1.8 1.2 1.0
Biotype 2 2.2* 1.0 −1.0
NP_001117743.1 Caspase 6 precursor 2 Apoptotic process Biotype 1 2.2* −1.1 1.2
Biotype 2 2.1* −1.2 −1.1
XP_021477916.1 Interferon-induced GTP-binding protein Mx2 5 GTPase activity Biotype 1 2.0 1.3 −1.1
Biotype 2 2.4* 1.3 −1.3
XP_021468639.1 Gamma-interferon-inducible lysosomal thiol reductase 3 Antigen processing and presentation Biotype 1 3.0* −1.9 1.4
Biotype 2 4.4* −1.1 1.3
XP_021466891.1 Precerebellin-like protein 5 Response to lipopolysaccharide Biotype 1 2.9* 5.3* 2.0
Biotype 2 2.2 3.3* 1.3
XP_021453615.1 Calretinin-like 6 Calcium ion binding Biotype 1 2.5* 1.5 1.2
Biotype 2 3.0* 1.6 1.0
XP_021426220.1 Regucalcin 6 Calcium ion binding Biotype 1 2.1 1.0 1.4
Biotype 2 3.1* 1.2 1.1
XP_021480508.1 Ras-related protein Rab-5C 4 GTPase activity Biotype 1 1.7 1.0 1.3
Biotype 2 2.4* 1.1 1.0
XP_021477941.1 Fructose-1,6-bisphosphatase 1 3 Carbohydrate metabolic process Biotype 1 3.8* 1.4 1.0
Biotype 2 2.2 1.0 −1.2
XP_021434786.1 Beta-hexosaminidase 2 Carbohydrate metabolic process Biotype 1 2.4* −1.5 −1.0
Biotype 2 2.5* −1.1 1.2
XP_021467816.1 Alpha-N-acetylgalactosaminidase 6 Carbohydrate metabolic process Biotype 1 3.0* −1.3 1.2
Biotype 2 4.1* 1.1 1.3
  1. Fold change was statistically analyzed in the posterior intestine of rainbow trout exposed to Y. ruckeri biotype 1 (CSF007-82) and biotype 2 (A7959-11) versus control posterior intestine of rainbow trout samples (n = 3 per time point).
  2. * Statistically significant difference according to both ANOVA and post hoc Tukey’s HSD with FDR-adjusted p-value < 0.05 and fold change < −2 or > +2. (Full table is presented in Additional file 4).