Skip to main content

Table 1 Microbiome results of the milk sample included in both datasets

From: Bovine milk microbiome: a more complex issue than expected

Genus

Reads in dataset 1

Relative abundance, %

Reads in dataset 2

Relative abundance, %

Acinetobacter

0

0

337

0.9

Agrobacterium

487

1.9

270

0.7

Akkermansia

259

1.0

0

0

Alkaliphilus

233

0.9

6

0.02

Bacillus

95

0.4

824

2.2

Bacteroides

1177

4.5

11

0.03

Blautia

2477

9.5

1062

2.8

Calothrix

296

1.1

2

0.005

Chryseobacterium

1

0.004

11 426

30.4

Clostridium

623

2.4

318

0.8

Corynebacterium

37

0.1

4516

12.0

Delftia

0

0

499

1.3

Desulfotomaculum

3

0.01

1405

3.7

Desulfovibrio

541

2.1

5

0.01

Dysgonomonas

364

1.4

171

0.5

Enhydrobacter

0

0

884

2.4

Enterococcus

447

1.7

7176

19.1

Fibrobacter

565

2.2

0

0

Flavobacterium

46

0.2

443

1.2

Lachnospira

289

1.1

104

0.3

Lactobacillus

303

1.2

1

0.002

Legionella

6

0.02

199

0.5

Leptotrichia

0

0

808

2.2

Candidatus Methylacidiphilum

1120

4.3

0

0

Methylobacterium

0

0

352

0.9

Microbacterium

0

0

181

0.5

Mycobacterium

0

0

308

0.8

Neisseria

0

0

934

2.5

Oscillospira

719

2.8

0

0

Oxalobacter

1

0.004

262

0.7

Paludibacter

312

1.2

103

0.3

Parabacteroides

0

0

161

0.4

Parapedobacter

249

1.0

0

0

Paraprevotella

671

2.6

2

0.005

Pedobacter

629

2.4

120

0.3

Pelomonas

0

0

156

0.4

Phascolarctobacterium

357

1.4

0

0

Porphyromonas

454

1.7

3

0.008

Prevotella

1081

4.2

146

0.4

Propionicimonas

0

0

387

1.0

Pseudobutyrivibrio

282

1.1

0

0

Pseudomonas

204

0.8

349

0.9

Ralstonia

87

0.3

181

0.5

Ruminococcus

623

2.4

60

0.2

Slackia

312

1.2

1

0.003

Sphingobacterium

2587

10.0

133

0.4

Sphingomonas

245

0.9

142

0.4

Staphylococcus

466

1.8

246

0.7

Streptococcus

247

1.0

3

0.008

Tepidimonas

0

0

373

1.0

Treponema

2760

10.6

0

0

Trichococcus

3

0.01

375

1.0

Total amount of reads in the sample

25,961

 

37,527

 
  1. The sample was positive for Enterococcus spp. in PCR and bacterial culture. Thirty bacterial genera with highest number of 16S reads in this sample in dataset 1 and in dataset 2, 52 bacterial genera in total, were included in this table. Only 8 genera belonged to the 30 genera with highest read numbers in both datasets. The number and relative amount of reads are italicized when belonging to the top 30.