Skip to main content

Table 2 Comparison of normalized enrichment scores (NES) obtained by using gene set enrichment analysis (GSEA) of immune-related pathways

From: Spleen and head kidney differential gene expression patterns in trout infected with Lactococcus garvieae correlate with spleen granulomas

Pathway

Size

Spleen

Kidney

NES

NES

COMPLEMENT-K

12

1.66*

1.05

NOD-K

12

1.45*

1.31

MAPK-K

17

1.43*

−0.84

APOPTOSIS-K

12

1.41

1.52*

NFKB-K

26

1.26

1.50*

FGF SIGNALING PATHWAY-W

7

−1.64*

−1.06

  1. The Table shows the NES values of each GS ordered by those of spleen.
  2. Terminal-K: KEGG pathway, Terminal-W: Wikipathways, NOD: nucleotide-binding oligomerization domain-like receptors, MAPK: mitogen-activated protein kinase, NFKB: nuclear factor k-light-chain-enhancer of activated B cells, FGF: the fibroblast growth factor signalling pathway.
  3. * Italic, FDR q value < 0.25. Size: number of genes analysed.
Back to article page

Veterinary Research

ISSN: 1297-9716