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Table 2 Comparison of normalized enrichment scores (NES) obtained by using gene set enrichment analysis (GSEA) of immune-related pathways

From: Spleen and head kidney differential gene expression patterns in trout infected with Lactococcus garvieae correlate with spleen granulomas

Pathway Size Spleen Kidney
NES NES
COMPLEMENT-K 12 1.66* 1.05
NOD-K 12 1.45* 1.31
MAPK-K 17 1.43* −0.84
APOPTOSIS-K 12 1.41 1.52*
NFKB-K 26 1.26 1.50*
FGF SIGNALING PATHWAY-W 7 1.64* −1.06
  1. The Table shows the NES values of each GS ordered by those of spleen.
  2. Terminal-K: KEGG pathway, Terminal-W: Wikipathways, NOD: nucleotide-binding oligomerization domain-like receptors, MAPK: mitogen-activated protein kinase, NFKB: nuclear factor k-light-chain-enhancer of activated B cells, FGF: the fibroblast growth factor signalling pathway.
  3. * Italic, FDR q value < 0.25. Size: number of genes analysed.