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Table 1 Comparison of normalized enrichment scores (NES) obtained by using gene set enrichment analysis (GSEA) of cellular gene-sets (cGS)

From: Spleen and head kidney differential gene expression patterns in trout infected with Lactococcus garvieae correlate with spleen granulomas

cGS No. genes per cGS Spleen Kidney
NKCELLS 20 1.05 1.72*
CTLs 9 0.93 1.60*
TREG 11 1.15 1.42*
TH2 14 1.19 1.32
MACROPHAGES 16 1.62* 1.29
TH1 13 1.33 1.24
TH17 18 1.02 0.74
B 9 0.92 −0.52
BT 8 0.93 −0.53
NEUTROPHIL 7 1.44* −0.80
DENDRITIC 5 −0.94 −1.27
  1. The Table shows the NES of each cGS on the different trout phenotypes ordered by those of kidney.
  2. NK-cells: natural killer cells, CTL: antigen-specific cytotoxic T cells, Treg: T regulatory cells, Th2: T-helper 2 cells, Macrophages: monocyte/macrophages, Th1: T-helper 1 cells, Th17: T-helper 17 cells, B cells: IgM producing cells, BT cells: IgT producing cells, neutrophil: neutrophil and granulocyte cells, dendritic: dendritic cells.
  3. * FDR q value < 0.25.