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Table 1 Comparison of normalized enrichment scores (NES) obtained by using gene set enrichment analysis (GSEA) of cellular gene-sets (cGS)

From: Spleen and head kidney differential gene expression patterns in trout infected with Lactococcus garvieae correlate with spleen granulomas

cGS

No. genes per cGS

Spleen

Kidney

NKCELLS

20

1.05

1.72*

CTLs

9

0.93

1.60*

TREG

11

1.15

1.42*

TH2

14

1.19

1.32

MACROPHAGES

16

1.62*

1.29

TH1

13

1.33

1.24

TH17

18

1.02

0.74

B

9

0.92

−0.52

BT

8

0.93

−0.53

NEUTROPHIL

7

1.44*

−0.80

DENDRITIC

5

−0.94

−1.27

  1. The Table shows the NES of each cGS on the different trout phenotypes ordered by those of kidney.
  2. NK-cells: natural killer cells, CTL: antigen-specific cytotoxic T cells, Treg: T regulatory cells, Th2: T-helper 2 cells, Macrophages: monocyte/macrophages, Th1: T-helper 1 cells, Th17: T-helper 17 cells, B cells: IgM producing cells, BT cells: IgT producing cells, neutrophil: neutrophil and granulocyte cells, dendritic: dendritic cells.
  3. * FDR q value < 0.25.
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Veterinary Research

ISSN: 1297-9716