Primers for target genes (gld-genes are involved in motility, spr-genes in adhesion and porV in virulence)
|
FC_gldK_fwd
|
GCCAAATAGCACCCTCTATCA
|
102
|
103.0
|
98.9
|
This study
|
FC_gldK_rev
|
AACAGAAGCCGAATGGGAATA
|
FC_gldL_fwd
|
GCTTCTGTACCTAAACCAGCA
|
94
|
99.9
|
99.5
|
This study
|
FC_gldL_rev
|
TTGGTGCGGCAGTAGTAATC
|
FC_gldM_fwd
|
ACTACCACATCACCTCTTTGTG
|
93
|
102.4
|
99.2
|
This study
|
FC_gldM_rev
|
TCCAGGGCAACCAACAATAG
|
FC_gldN_fwd
|
GCAAGCGCTATGCTTATTGCTGGT
|
131
|
97.8
|
99.0
|
[31]
|
FC_gldN_rev
|
GCAGTTGGTTGTCCCCCTGCT
|
FC_sprA_fwd
|
AGGCGATGGTATTTCGTTAGG
|
122
|
101.9
|
99.5
|
This study
|
FC_sprA_rev
|
GTACGCGTCCTGCTTGATAA
|
FC_sprE_fwd
|
AGCCGTGCAGAAGATAAAGC
|
151
|
92.4
|
99.0
|
[31]
|
FC_sprE_rev
|
ACGCTTCTAATGCGGGTACAA
|
FC_sprT_fwd
|
AACCAGGACTGCATTACGGA
|
144
|
91.1
|
99.2
|
[31]
|
FC_sprT_rev
|
GCTTGATGTTACCTGTGCGTT
|
FC_porV_fwd
|
GTGCCAACTCCTAAAACAGCC
|
152
|
102.7
|
99.3
|
[31]
|
FC_porV_rev
|
AAACCTCCTGGAGCATCACC
|
Primers for reference genes
|
FC_16S_fwd
|
ACGATCAAACGGCCATTG
|
119
|
105.0
|
99.4
|
[30]
|
FC_16S_rev
|
AGTAACCTGCCTTCGCAATC
|
FC_gap1_fwd
|
ACCATCCCAAACAGGAGCCGC
|
98
|
103.3
|
99.3
|
[30]
|
FC_gap1_rev
|
CGTCTGCTGTAGGTACGCGCA
|
FC_glyA_fwd
|
CCAAACCCTTGGGGCTATACAACCC
|
98
|
103.2
|
99.6
|
[30]
|
FC_glyA_rev
|
AGAGGGCCTCCTTGATTACCTGGAA
|
FC_rplQ_fwd
|
AGCTGCTAAAGTAGGTGACCGTCC
|
75
|
96.7
|
99.1
|
[30]
|
FC_rplQ_rev
|
GCGTTATCTCCTAAACGGTTCCCCA
|