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Table 3 Differentially abundant genera in the caecal or ileal microbiota

From: In-feed resin acids reduce matrix metalloproteinase activity in the ileal mucosa of healthy broilers without inducing major effects on the gut microbiota

Phylum Class Order Family Genus Mean relative abundance Log2 fold change Adjusted p-value
Control Resin acids
Ileum
 Actinobacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium 0.028% 0.000% −5.96 7.26E−14
 Actinobacteria Actinobacteria Micrococcales Brevibacteriaceae Brevibacterium 0.067% 0.011% −3.29 8.14E−06
 Actinobacteria Actinobacteria Corynebacteriales Corynebacteriaceae Corynebacterium 1 2.898% 1.797% −1.55 2.81E−02
 Firmicutes Bacilli Bacillales Planococcaceae Kurthia 0.167% 0.000% −8.81 5.59E−28
 Firmicutes Bacilli Lactobacillales Carnobacteriaceae Trichococcus 0.114% 0.013% −3.46 1.36E−07
 Firmicutes Bacilli Lactobacillales Carnobacteriaceae Jeotgalibaca 0.048% 0.062% −1.86 8.30E−03
 Firmicutes Bacilli Lactobacillales Lactobacillaceae Pediococcus 0.006% 0.027% 1.84 2.40E−02
 Firmicutes Clostridia Clostridiales Peptostreptococcaceae Ambiguous_taxa 0.095% 0.001% −5.58 2.07E−04
 Firmicutes Clostridia Clostridiales Clostridiaceae 1 Candidatus Arthromitus 0.734% 0.318% −1.99 1.62E−02
 Firmicutes Clostridia Clostridiales Peptostreptococcaceae uncultured 0.003% 0.027% 2.99 7.91E−05
 Firmicutes Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Turicibacter 0.014% 0.002% −3.12 4.92E−05
 Firmicutes Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Erysipelatoclostridium 0.005% 0.020% 1.65 1.50E−02
Caecum
 Actinobacteria Actinobacteria Bifidobacteriales Bifidobacteriaceae Bifidobacterium 3.369% 0.004% −8.90 2.62E−27
 Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus 2.484% 4.904% 1.51 3.75E−02
 Firmicutes Clostridia Clostridiales Ruminococcaceae uncultured 2.935% 5.833% 1.42 1.63E−02
 Firmicutes Clostridia Clostridiales Ruminococcaceae DTU089 0.727% 1.257% 1.93 1.63E−02
 Firmicutes Clostridia Clostridiales Lachnospiraceae Tyzzerella 0.129% 0.608% 2.76 2.63E−02
 Firmicutes Clostridia Clostridiales Lachnospiraceae Lachnoclostridium 5 0.011% 0.083% 3.64 1.63E−02
 Firmicutes Clostridia Clostridiales Ruminococcaceae Ruminococcaceae UCG004 0.000% 0.040% 7.21 1.67E−03
  1. Significant differences in genus level abundance in the caecal or ileal microbiota from birds fed the resin acid-supplemented diet as compared to the control diet. The taxonomic classification, the mean relative abundance and the log2 fold change (resin acids/control) of the DESeq2 normalized abundance of each genus are shown.