In-feed resin acids reduce matrix metalloproteinase activity in the ileal mucosa of healthy broilers without inducing major effects on the gut microbiota

Aguirre, Marisol; Vuorenmaa, Juhani; Valkonen, Eija; Kettunen, Hannele; Callens, Chana; Haesebrouck, Freddy; Ducatelle, Richard; Van Immerseel, Filip; Goossens, Evy

doi:10.1186/s13567-019-0633-3

Veterinary Research

Table 3 Differentially abundant genera in the caecal or ileal microbiota

From: In-feed resin acids reduce matrix metalloproteinase activity in the ileal mucosa of healthy broilers without inducing major effects on the gut microbiota

Phylum	Class	Order	Family	Genus	Mean relative abundance		Log₂ fold change	Adjusted p-value
Phylum	Class	Order	Family	Genus	Control	Resin acids	Log₂ fold change	Adjusted p-value
Ileum
Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Bifidobacterium	0.028%	0.000%	−5.96	7.26E−14
Actinobacteria	Actinobacteria	Micrococcales	Brevibacteriaceae	Brevibacterium	0.067%	0.011%	−3.29	8.14E−06
Actinobacteria	Actinobacteria	Corynebacteriales	Corynebacteriaceae	Corynebacterium 1	2.898%	1.797%	−1.55	2.81E−02
Firmicutes	Bacilli	Bacillales	Planococcaceae	Kurthia	0.167%	0.000%	−8.81	5.59E−28
Firmicutes	Bacilli	Lactobacillales	Carnobacteriaceae	Trichococcus	0.114%	0.013%	−3.46	1.36E−07
Firmicutes	Bacilli	Lactobacillales	Carnobacteriaceae	Jeotgalibaca	0.048%	0.062%	−1.86	8.30E−03
Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Pediococcus	0.006%	0.027%	1.84	2.40E−02
Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae	Ambiguous_taxa	0.095%	0.001%	−5.58	2.07E−04
Firmicutes	Clostridia	Clostridiales	Clostridiaceae 1	Candidatus Arthromitus	0.734%	0.318%	−1.99	1.62E−02
Firmicutes	Clostridia	Clostridiales	Peptostreptococcaceae	uncultured	0.003%	0.027%	2.99	7.91E−05
Firmicutes	Erysipelotrichia	Erysipelotrichales	Erysipelotrichaceae	Turicibacter	0.014%	0.002%	−3.12	4.92E−05
Firmicutes	Erysipelotrichia	Erysipelotrichales	Erysipelotrichaceae	Erysipelatoclostridium	0.005%	0.020%	1.65	1.50E−02
Caecum
Actinobacteria	Actinobacteria	Bifidobacteriales	Bifidobacteriaceae	Bifidobacterium	3.369%	0.004%	−8.90	2.62E−27
Firmicutes	Bacilli	Lactobacillales	Lactobacillaceae	Lactobacillus	2.484%	4.904%	1.51	3.75E−02
Firmicutes	Clostridia	Clostridiales	Ruminococcaceae	uncultured	2.935%	5.833%	1.42	1.63E−02
Firmicutes	Clostridia	Clostridiales	Ruminococcaceae	DTU089	0.727%	1.257%	1.93	1.63E−02
Firmicutes	Clostridia	Clostridiales	Lachnospiraceae	Tyzzerella	0.129%	0.608%	2.76	2.63E−02
Firmicutes	Clostridia	Clostridiales	Lachnospiraceae	Lachnoclostridium 5	0.011%	0.083%	3.64	1.63E−02
Firmicutes	Clostridia	Clostridiales	Ruminococcaceae	Ruminococcaceae UCG−004	0.000%	0.040%	7.21	1.67E−03

Significant differences in genus level abundance in the caecal or ileal microbiota from birds fed the resin acid-supplemented diet as compared to the control diet. The taxonomic classification, the mean relative abundance and the log₂ fold change (resin acids/control) of the DESeq2 normalized abundance of each genus are shown.

Back to article page

ISSN: 1297-9716

Contact us

Submission enquiries: veterinary.research@inrae.fr
General enquiries: info@biomedcentral.com