Straina
|
Genotype
|
Site of isolation
|
Year of isolation
|
---|
MP-PCRb
|
Sequence type
|
mrp variantb
|
---|
08/1324-1
|
cps7/mrp
|
29
|
mrp
|
Brain
|
2009
|
V2217/2
|
cps7/mrp
|
29
|
mrp
|
Lung
|
2010
|
S5552/1
|
cps7/sly
|
89
|
–
|
Brain
|
2010
|
V154/3
|
cps7/mrp
|
29
|
mrp
|
Brain
|
2012
|
V592/1
|
cps7/mrp
|
29
|
mrp
|
Lung
|
2012
|
R1984-1+/1
|
cps7/mrp
|
29
|
mrp****
|
Brain
|
2012
|
#451
|
cps7/mrp
|
29
|
mrp*
|
Brain
|
2012
|
13-00283-02
|
cps7/mrp
|
29
|
mrp****
|
Brain
|
2013
|
V3667/1
|
cps7/mrp
|
29
|
mrp*
|
Brain
|
2013
|
A2055/1
|
cps7/mrp
|
29
|
mrp
|
Joint
|
2013
|
V2310/1
|
cps7/mrp
|
29
|
mrp
|
Brain
|
2013
|
V3052/2
|
cps7/mrp
|
29
|
mrp
|
Lung
|
2013
|
D14412/3
|
cps7/mrp
|
29
|
mrp***
|
Brain
|
2014
|
15/2-7
|
cps7/mrp
|
29
|
mrp
|
Spleen
|
2015
|
16-00654-02
|
cps7/mrp
|
29
|
mrp****
|
Joint
|
2016
|
16-00654-03
|
cps7/mrp
|
29
|
mrp****
|
Pericardium
|
2016
|
16-00552-05
|
cps7/mrp
|
777
|
mrp
|
Brain
|
2016
|
16-00131-08
|
cps7/mrp
|
29
|
mrp
|
Brain
|
2016
|
16-00052-01
|
cps7/mrp
|
29
|
mrp
|
Unknown
|
2016
|
16-00596-02
|
cps7/mrp
|
29
|
mrp*
|
Brain
|
2016
|
30Tc
|
cps7
|
nd
|
–
|
Tonsil
|
2014
|
262/3c
|
cps7
|
nd
|
–
|
Tonsil
|
2015
|
- nd: not defined.
- aAll strains were isolated from piglets of different herds, except 16-00654-02 and 16-00653-03 as well as 30T and 262/3, respectively.
- bAll strains were genotyped in the multiplex (MP) PCR and in the mrp variant PCR described by Silva et al. [19]. None of the strains was positive for the epf gene encoding EF.
- cSequences of MLST alleles of strains 30T and 262/3 have also been submitted to the MLST database, but the sequence type has not yet been assigned (id 1792 and 1793, respectively).