Skip to main content

Table 2 Recombination events in strain GZ11

From: Genomic and biologic comparisons of cyprinid herpesvirus 3 strains

Event Genome regiona Major parentb Minor parentc Detection methodd
R G B M C S T
1 117-5598 FL Unknown ** * * ** * ns *
2 77366-94864 Cavoy T *** *** *** *** *** ns ***
3 269851-271724 E M3 ** ns ns ns ns ns ns
  1. aCoordinates are listed in relation to the sequence of strain U (GenBank accession number DQ657948.1). The results for strain GZ11-SC were the same as for strain GZ11.
  2. bMajor parent strain was automatically predicted by the RDP software. It represents the closest relative of the recombinant strain taking into account the entire genome but excluding the recombination region.
  3. cMinor parent was automatically predicted by the RDP software. It represents the closest relative of the recombinant strain taking into account the recombination region.
  4. dDetection methods used in RDP4: R, RDP; G, GENECONV; B, BOOTSCAN; M, MaxChi; C, CHIMAERA; S, SISCAN; T, 3SEQ. Statistical significance is indicated according to the code described in "Materials and methods".