Genomic and biologic comparisons of cyprinid herpesvirus 3 strains

Table 2 Recombination events in strain GZ11

Event	Genome region^a	Major parent^b	Minor parent^c	Detection method^d
Event	Genome region^a	Major parent^b	Minor parent^c	R	G	B	M	C	S	T
1	117-5598	FL	Unknown	**	*	*	**	*	ns	*
2	77366-94864	Cavoy	T	***	***	***	***	***	ns	***
3	269851-271724	E	M3	**	ns	ns	ns	ns	ns	ns

^aCoordinates are listed in relation to the sequence of strain U (GenBank accession number DQ657948.1). The results for strain GZ11-SC were the same as for strain GZ11.
^bMajor parent strain was automatically predicted by the RDP software. It represents the closest relative of the recombinant strain taking into account the entire genome but excluding the recombination region.
^cMinor parent was automatically predicted by the RDP software. It represents the closest relative of the recombinant strain taking into account the recombination region.
^dDetection methods used in RDP4: R, RDP; G, GENECONV; B, BOOTSCAN; M, MaxChi; C, CHIMAERA; S, SISCAN; T, 3SEQ. Statistical significance is indicated according to the code described in "Materials and methods".

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