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Table 1 SLA Class I and Class II, allele groups and CD163 analysed by sanger sequencing

From: Analysis of the genetic diversity and mRNA expression level in porcine reproductive and respiratory syndrome virus vaccinated pigs that developed short or long viremias after challenge

Allele Group/gene

Amplicon size (in bp)

Contigs obtained

Mean coverage

PCR primers

SLA Class I

 SLA-1*07a

220

9

2

SLA-1*07XX F 5′-GCCGGGTCTCACACCATCCAGAT-3′

    

SLA-1*07XX R 5′-GGCCCTGCAGGTAGCTCCTCAAT-3′

 SLA-1*08a

577

18

2

SLA-1*08XX F 5′-CGCGTGGACTCCCGCTTCTTCATT-3′

    

SLA-1*08XX R 5′-CCAGGAGCGCAGGTCCTCGTT-3′

 SLA-2*05a

544

19

2

SLA-2*05XX F 5′-CGAGTGAACCTGCGCACAGCTCTT-3′

    

SLA-2*05XX R 5′-CTGCAGCGTGTCCTTCCCCATCTC-3′

 SLA-3*04a

192

20

2

SLA-3*04XX F 5′-GGAAGCCCCGTTTCATCGAA-3′

    

SLA-3*04XX R 5′-GCAGGTTTTTCAGGTTCACTCGGA-3′

SLA Class II

 SLA-2*DQAb

898

20

3.38

DQAiF3 5′-CTAGAGACTGTGCCACAGATGAAG-3′

    

DQAe3R1 5′-ACAGATGAGGGTGTTGGGCTGA-3′

 SLA-2*DRBc

1308

12

2.51

DRBi1F9 5′-GCGGTGCCTTCAGCCTTTTCAGGAG-3′

    

DRBi2R9 5′-AACAGTAGCAACTGTTTTGAGAGC-3′

 CD163d

3813

11

3.55

CD163-Ex7Fw 5′-ATTCTGACTTCTCTCTGGAGGC-3′

    

CD163-2700R 5′-GAGATGATGGGCACTGCCATAT-3′

  1. Length of the PCR fragments amplified, number of contigs obtained (out of 20 analysed), mean coverage per position of the contigs obtained and primers used.
  2. a[27], b [28], c [29], d [16].