Allele Group/gene | Amplicon size (in bp) | Contigs obtained | Mean coverage | PCR primers |
---|---|---|---|---|
SLA Class I | ||||
SLA-1*07a | 220 | 9 | 2 | SLA-1*07XX F 5′-GCCGGGTCTCACACCATCCAGAT-3′ |
SLA-1*07XX R 5′-GGCCCTGCAGGTAGCTCCTCAAT-3′ | ||||
SLA-1*08a | 577 | 18 | 2 | SLA-1*08XX F 5′-CGCGTGGACTCCCGCTTCTTCATT-3′ |
SLA-1*08XX R 5′-CCAGGAGCGCAGGTCCTCGTT-3′ | ||||
SLA-2*05a | 544 | 19 | 2 | SLA-2*05XX F 5′-CGAGTGAACCTGCGCACAGCTCTT-3′ |
SLA-2*05XX R 5′-CTGCAGCGTGTCCTTCCCCATCTC-3′ | ||||
SLA-3*04a | 192 | 20 | 2 | SLA-3*04XX F 5′-GGAAGCCCCGTTTCATCGAA-3′ |
SLA-3*04XX R 5′-GCAGGTTTTTCAGGTTCACTCGGA-3′ | ||||
SLA Class II | ||||
SLA-2*DQAb | 898 | 20 | 3.38 | DQAiF3 5′-CTAGAGACTGTGCCACAGATGAAG-3′ |
DQAe3R1 5′-ACAGATGAGGGTGTTGGGCTGA-3′ | ||||
SLA-2*DRBc | 1308 | 12 | 2.51 | DRBi1F9 5′-GCGGTGCCTTCAGCCTTTTCAGGAG-3′ |
DRBi2R9 5′-AACAGTAGCAACTGTTTTGAGAGC-3′ | ||||
CD163d | 3813 | 11 | 3.55 | CD163-Ex7Fw 5′-ATTCTGACTTCTCTCTGGAGGC-3′ |
CD163-2700R 5′-GAGATGATGGGCACTGCCATAT-3′ |