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Table 2 List of 25 of the most induced or suppressed proteins in the chicken caecum following colonisation with microbiota of different composition in comparison to protein abundance in the caecum of germ-free chickens (only the significant fold changes to the expression in germ free chickens are shown)

From: Gene expression in the chicken caecum is dependent on microbiota composition

Microbiota INDUCED caecal proteins Microbiota SUPPRESSED caecal proteins
Protocol Label-free Label   Label-free Label
Microbiota E. coli Enterococcus Tetra Conv Conv E. coli Enterococcus Tetra Conv Conv
Age (days) 14 28 56 14 28 56 56 56 56 14 28 56 14 28 56 56 56 56
Ig λ   6.61 8.77   2.67   7.30 8.00 20.00 PCNA 1.79         20.00
GRPEL1       1.41    20.00 GSTK1        2.44   3.93
PRSS2      1.72    2.92 17.59 IVD      1.82     3.62
CLIC5     1.76   1.81    15.53 COL6A3   2.72 3.39    6.21    2.50
RPL14      1.44     9.59 UCHL1      1.38     2.44
TXN        1.79   8.40 COL6A2       4.81    2.34
HDGF       1.52    7.83 BAG2      1.61     2.29
CATHL2   2.50        4.12 BASP1         3.99 2.25
PLS1         2.63 3.49 COL6A1   2.02 1.91    4.28    2.20
PACSIN1   1.61        3.21 MYH10    2.07    3.29    2.19
SULT1C3 1.23        1.85 2.95 ACTA1    1.49       2.06
SYNJ2BP   2.04    1.73     2.57 SYNM   1.71        2.03
PAPSS2 1.70         2.49 PYGB   1.74 2.21    4.34    2.01
B2 M    1.58       2.47 PLEKHC1    2.21    5.95    1.95
ASS1         3.57 2.28 POSTN   1.59    1.79     1.78
CALB1         3.04 2.26 SARNP     1.35     1.65 1.75
PSAP 1.95      3.17    2.18 YWHAQ   1.30        1.74
TXNL1        1.44   2.08 EIF4A2   1.61 3.55    6.45    1.71
ISG12-2   1.42        2.00 VAT1      1.41     1.70
PON2      2.64     1.85 MYH11    1.79    2.71    1.67
CDH17   1.19     1.79    1.81 TPPP3    1.24    1.22    1.67
MPP1   1.61 2.26 2.23 2.00 2.66 2.08   1.81 TLN1       3.37    1.66
HSD17B4        2.02   1.78 DPYSL2    1.24       1.61
TST   1.33    1.40 1.20    1.77 COL5A1        2.49 3.69 1.61
CNN3    1.44    1.55    1.75 ATP1A1       3.33    1.60