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Table 2 List of 25 of the most induced or suppressed proteins in the chicken caecum following colonisation with microbiota of different composition in comparison to protein abundance in the caecum of germ-free chickens (only the significant fold changes to the expression in germ free chickens are shown)

From: Gene expression in the chicken caecum is dependent on microbiota composition

Microbiota INDUCED caecal proteins

Microbiota SUPPRESSED caecal proteins

Protocol

Label-free

Label

 

Label-free

Label

Microbiota

E. coli

Enterococcus

Tetra

Conv

Conv

E. coli

Enterococcus

Tetra

Conv

Conv

Age (days)

14

28

56

14

28

56

56

56

56

14

28

56

14

28

56

56

56

56

Ig λ

 

6.61

8.77

 

2.67

 

7.30

8.00

20.00

PCNA

1.79

       

20.00

GRPEL1

     

1.41

  

20.00

GSTK1

      

2.44

 

3.93

PRSS2

    

1.72

  

2.92

17.59

IVD

    

1.82

   

3.62

CLIC5

   

1.76

 

1.81

  

15.53

COL6A3

 

2.72

3.39

  

6.21

  

2.50

RPL14

    

1.44

   

9.59

UCHL1

    

1.38

   

2.44

TXN

      

1.79

 

8.40

COL6A2

     

4.81

  

2.34

HDGF

     

1.52

  

7.83

BAG2

    

1.61

   

2.29

CATHL2

 

2.50

      

4.12

BASP1

       

3.99

2.25

PLS1

       

2.63

3.49

COL6A1

 

2.02

1.91

  

4.28

  

2.20

PACSIN1

 

1.61

      

3.21

MYH10

  

2.07

  

3.29

  

2.19

SULT1C3

1.23

      

1.85

2.95

ACTA1

  

1.49

     

2.06

SYNJ2BP

 

2.04

  

1.73

   

2.57

SYNM

 

1.71

      

2.03

PAPSS2

1.70

       

2.49

PYGB

 

1.74

2.21

  

4.34

  

2.01

B2 M

  

1.58

     

2.47

PLEKHC1

  

2.21

  

5.95

  

1.95

ASS1

       

3.57

2.28

POSTN

 

1.59

  

1.79

   

1.78

CALB1

       

3.04

2.26

SARNP

   

1.35

   

1.65

1.75

PSAP

1.95

    

3.17

  

2.18

YWHAQ

 

1.30

      

1.74

TXNL1

      

1.44

 

2.08

EIF4A2

 

1.61

3.55

  

6.45

  

1.71

ISG12-2

 

1.42

      

2.00

VAT1

    

1.41

   

1.70

PON2

    

2.64

   

1.85

MYH11

  

1.79

  

2.71

  

1.67

CDH17

 

1.19

   

1.79

  

1.81

TPPP3

  

1.24

  

1.22

  

1.67

MPP1

 

1.61

2.26

2.23

2.00

2.66

2.08

 

1.81

TLN1

     

3.37

  

1.66

HSD17B4

      

2.02

 

1.78

DPYSL2

  

1.24

     

1.61

TST

 

1.33

  

1.40

1.20

  

1.77

COL5A1

      

2.49

3.69

1.61

CNN3

  

1.44

  

1.55

  

1.75

ATP1A1

     

3.33

  

1.60

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Veterinary Research

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