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Table 2 Abortive agents isolated in pure culture/large number and the corresponding most abundant genera found by NGS

From: Amplicon sequencing of bacterial microbiota in abortion material from cattle

Sample ID Organ Abortive agents isolated in pure culture Most abundant genera found by NGS (≤ 75% of the reads)
13Ue197_Pl PL T. pyogenes Fusobacterium (74.04%), Trueperella (11.28%), others (14.71%)
13Ue755_Pl PL E. coli Enterobacteriaceae a (94.2%), others (5.8%)
13Ue1008_Pl PL V. metschnikovii Vibrio (89.92%), others (10.08%)
13Ue1137_Mg AC S. uberis Streptococcus (99.62%), others (0.38%)
13Ue1137_Pl PL S. uberis Streptococcus (99.33%), others (0.67%)
13Ue1143_Mg AC E. coli Enterobacteriaceae a (99.17%), others (0.83%)
13Ue1143_Pl PL E. coli Enterobacteriaceae a (96.18%), others (3.82%)
13Ue1275_Pl PL S. uberis Streptococcus (37.24%), Enterobacteriaceaea (25.92%), Lactococcus (21.27%), others (15.57%)
13Ue1450_Mg AC L. lactis Lactococcus (86.52%), others (13.48%)
14A26_Mg AC C. fetus subsp. fetus Campylobacter (60.38%), Pseudomonas (36.03%), others (3.59%)
14A26_Pl PL C. fetus subsp. fetus Pseudomonas (98.97%), others (1.03%)