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Table 3 Details of antibiotic resistance ontology of Yersinia ruckeri

From: Global proteomic profiling of Yersinia ruckeri strains

Protein Antibiotic resistance ontology Bit score
Bacterial regulatory, crp family protein (cyclic AMP receptor protein) Fluoroquinolone (enrofloxacin), beta-lactam (amoxicillin), Macrolide (erythromycin) 431.409
Cys regulon transcriptional activator CysB Aminocoumarin (novobiocin) 620.928
Copper-sensing two-component system response regulator CpxR Aminoglycoside (gentamicin), aminocoumarin (novobiocin) 389.808
Alanine tRNA ligase Aminocoumarin 1487.63
Transcription repair-coupling factor Fluoroquinolone 1938.7
Dihydropteroate synthase Sulfonamide 440.654
Membrane fusion protein of RND family multidrug efflux pump Fluoroquinolone, beta-lactam, Macrolide, Rifampin, Chloramphenicol, Tetracycline, Aminocoumarin 548.125
Beta-lactamase beta-lactam (amoxicillin) 608.601
Outer membrane channel protein Fluoroquinolone, beta-lactam, Macrolide, Rifampin, Chloramphenicol, Tetracycline, Aminocoumarin 689.878
Elongation factor Tu Elfamycin 583.178
Bifunctional polymyxin resistance protein ArnA Polymyxin B 951.814
DNA gyrase subunit A Fluoroquinolone 751.895
RND efflux system inner membrane transporter CmeB Fluoroquinolone, tetracycline 751.125
Isoleucine-tRNA ligase Mupirocin 219.55
  1. Antibiotic resistance ontology was predicted in the proteome of Y. ruckeri using a comprehensive antibiotic resistance database.