Veterinary Research

Table 3 Nucleotide and protein BLAST analysis of the IVI-1173 sequence

From: Heterogeneous antigenic properties of the porcine reproductive and respiratory syndrome virus nucleocapsid

Genome region	Nucleotide BLAST					Protein BLAST
Genome region	Closest strain	Accession number	Origin	Year	Nt^a	Closest strain	Accession number	Origin	Year	AA^b
Full length	LV	M96262	Netherlands	1993	89	N.a.^c	N.a.	N.a.	N.a.	N.a.
5′ UTR	DK-1992	KC862566	Denmark	1992	97	N.a.	N.a.	N.a.	N.a.	N.a.
ORF 1a	LV	M96262	Netherlands	1993	88	LV	M96262	Netherlands	1993	89
ORF 1b	CReSA-3266	JF276434	Germany	1996	90	LV	JF276434	Spain	2011	96
ORF 2	LV	M96262	Netherlands	1993	92	SD-01-07	AAR32995	USA	2003	96
ORF 2b	DK-2012-01-05-2	KC862574	Denmark	2012	96	14432/2011	ALH24924	Hungary	2011	100
ORF 3	E38	KT033457	South Korea	2007	89	Sp-28a	AEM00458	Spain	2011	86
ORF 4	Sp-16a	JF730930	Spain	2011	85	Sp-29a	AEM00498	Spain	2011	87
ORF 5	BH 95/10-08	JN651737	Germany	2002	93	BH 95/10-08	JN651737	Germany	2002	95
ORF 5a	K09-1351	JQ656126	Korea	2009	99	13V117	ALO24147	Belgium	2013	98
ORF 6	BH 95/10-08	JN651718	Germany	2002	93	469-05	AFH96401	UK	2005	96
ORF 7	Be1	L77914	UK	1995	96	LA2	AGT28447	Austria	2008	96
3′ UTR	DK-2003-7-2	KC862572	Denmark	2003	98	N.a.	N.a.	N.a.	N.a.	N.a.

^aPercentage of nucleotides identity.
^bPercentage of amino acid identity.
^cNot applicable.

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ISSN: 1297-9716

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