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Table 2 Comparison of nucleotide (nt) and amino acid (aa) identities between IVI-1173 and LV

From: Heterogeneous antigenic properties of the porcine reproductive and respiratory syndrome virus nucleocapsid

Sequence

Gene

% nt identity (length)

% aa identity (length)

Full length sequence

N.a.a

88.91% (15 065b/15 098c)

N.a.

5′ UTR

N.a.

96.38% (221)

N.a.

ORF1a

N.a.

87.76% (7191)

89.11% (2396)

Nsp1

86.32% (1155)

87.27% (385)

Nsp2

85.33% (2583)

81.30% (861)

Nsp3

90.68% (1341)

95.30% (447)

Nsp4

89.82% (609)

95.57% (203)

Nsp5

91.76% (510)

95.88% (170)

Nsp6

93.75% (48)

93.75% (16)

Nsp7a

86.13% (447)

95.97% (149)

Nsp7b

90.83% (360)

94.17% (120)

Nsp8

88.15% (135)

100% (45)

ORF1b

N.a.

90.19% (4392)

95.76% (1463)

Nsp9

90.59% (1935)

96.28% (645)

Nsp10

90.20% (1326)

95.70% (442)

Nsp11

89.88% (672)

95.54% (224)

Nsp12

88.89% (459)

94.08% (152)

ORF2a

GP2

92.4% (750)

93.98% (249)

ORF2b

E

95.31% (213)

97.15% (70)

ORF3

GP3

81.83% (777/798)

82.26% (258/265)

ORF4

GP4

84.24% (519/552)

83.61% (172/183)

ORF5

GP5

89.77% (606)

90.55% (201)

ORF5a

5a

96.97% (132)

95.35% (43)

ORF6

M

91.76% (522)

95.38% (173)

ORF7

N

94.83% (387)

94.53% (128)

3′ UTR

N.a.

94.74% (114)

N.a.

  1. aNot applicable.
  2. bGenome length of IVI-1173 without polyA tail.
  3. cGenome length of LV without polyA tail.