Sequence | Gene | % nt identity (length) | % aa identity (length) |
---|---|---|---|
Full length sequence | N.a.a | 88.91% (15Â 065b/15Â 098c) | N.a. |
5′ UTR | N.a. | 96.38% (221) | N.a. |
ORF1a | N.a. | 87.76% (7191) | 89.11% (2396) |
Nsp1 | 86.32% (1155) | 87.27% (385) | |
Nsp2 | 85.33% (2583) | 81.30% (861) | |
Nsp3 | 90.68% (1341) | 95.30% (447) | |
Nsp4 | 89.82% (609) | 95.57% (203) | |
Nsp5 | 91.76% (510) | 95.88% (170) | |
Nsp6 | 93.75% (48) | 93.75% (16) | |
Nsp7a | 86.13% (447) | 95.97% (149) | |
Nsp7b | 90.83% (360) | 94.17% (120) | |
Nsp8 | 88.15% (135) | 100% (45) | |
ORF1b | N.a. | 90.19% (4392) | 95.76% (1463) |
Nsp9 | 90.59% (1935) | 96.28% (645) | |
Nsp10 | 90.20% (1326) | 95.70% (442) | |
Nsp11 | 89.88% (672) | 95.54% (224) | |
Nsp12 | 88.89% (459) | 94.08% (152) | |
ORF2a | GP2 | 92.4% (750) | 93.98% (249) |
ORF2b | E | 95.31% (213) | 97.15% (70) |
ORF3 | GP3 | 81.83% (777/798) | 82.26% (258/265) |
ORF4 | GP4 | 84.24% (519/552) | 83.61% (172/183) |
ORF5 | GP5 | 89.77% (606) | 90.55% (201) |
ORF5a | 5a | 96.97% (132) | 95.35% (43) |
ORF6 | M | 91.76% (522) | 95.38% (173) |
ORF7 | N | 94.83% (387) | 94.53% (128) |
3′ UTR | N.a. | 94.74% (114) | N.a. |