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Table 3 Differentially expressed proteins of Y. ruckeri strains (SP-05, CSF007-82, 7959-11 and YRNC-10)

From: Shotgun proteomic analysis of Yersinia ruckeri strains under normal and iron-limited conditions

UniProt accession number Ambiguous accession number Protein Function SP-05 CSF007-82 7959-11 YRNC-10
Metabolic
 C4UF95_YERRU A0A085U4I3_YERRU 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase Glycolytic process 3.8* 3.6* 3.2* 3.1*
 C4UMV0_YERRU A0A085U9H2_YERRU Succinate dehydrogenase iron-sulfur subunit Glycolytic process/iron-sulfur cluster binding −3.3* −1.9 −1.9 −1.9
 C4UH25_YERRU A0A0A8VEE9_YERRU Phosphoenolpyruvate carboxykinase Gluconeogenesis −3.2* 1.3 −4.0 −3.0
 C4UIX8_YERRU A0A085U3P6_YERRU 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Glycolytic process −4.0* −3.5* −3.7* −3.6*
 C4UN43_YERRU A0A085U407_YERRU Fumarate hydratase class I, aerobic Fumarate hydratase activity −4.6* −2.5 −2.4 −2.7
 A0A0A5FJV0_YERRU A0A085U4U1_YERRU Catalase Peroxidase activity −6.2* −2.7 −2.4 −2.7
Amino acid biosynthesis
 A0A0A8VHV7_YERRU A0A085U7L2_YERRU Aromatic-L-amino-acid decarboxylase Amino acid metabolic process 1.3 1.9 4.4* 3.4*
 C4UIX0_YERRU A0A085U3N7_YERRU Periplasmic protein CpxP Protein misfolding 4.4* 1.8 2.6 1.9
 C4UM91_YERRU A0A0A8VLE4_YERRU Amino acid adenylation domain protein Amino acid activation for nonribosomal peptide biosynthetic process 1.1 2.0 3.9* 2.4
 C4UL33_YERRU A0A085UBI2_YERRU FKBP-type 16 kDa peptidyl-prolyl cistrans isomerase Protein folding −1.7 −1.0 3.3 5.0*
 A0A094STG7_YERRU A0A085U807_YERRU 50S ribosomal protein L35 rRNA binding −2.3 −3.4 −1.9 −3.6*
 C4UFW5_YERRU A0A085U806_YERRU 50S ribosomal protein L20 rRNA binding −4.1* −1.9 1.0 −1.6
Others
 A0A094SMR6_YERRU A0A085U3C8_YERRU MbtH-like family protein Nonribosomal peptide formation 14.6 5.6* 12.5 7.7
 C4UJX4_YERRU A0A085U549_YERRU Uncharacterized protein Putative exported protein 4.9* 1.4 1.3 1.5
 A0A094SSK4_YERRU A0A085UBK3_YERRU Probable phosphoglycerate mutase GpmB Phosphoglycerate mutase activity −3.1* −1.1 −2.0 −1.4
 C4UF96_YERRU A0A085U4I2_YERRU PsiF repeat protein None predicted −1.9 −5.2* −4.5 −1.1
 C4UEV3_YERRU A0A085U4A9_YERRU Molybdopterin biosynthesis protein moeB Molybdopterin cofactor biosynthetic process 1.1 −1.2 −2.3 −4.1*
 C4UP53_YERRU A0A085U2Q2_YERRU Phosphopantetheine attachment site family protein Phosphopantetheine binding −1.8 −1.2 −1.7 −3.2*
 C4UJI8_YERRU A0A0A8VHP1_YERRU Peptidase S49 family protein Serine-type endopeptidase activity −1.0 −2.3 −2.9 −4.1*
 C4UFK9_YERRU A0A085U7Q2_YERRU Uncharacterized protein Putative lipoprotein −1.2 1.1 −1.0 4.8*
  1. Differentially expressed proteins details as in Table 1.