Table 3 Differentially expressed proteins of Y. ruckeri strains (SP-05, CSF007-82, 7959-11 and YRNC-10)
From: Shotgun proteomic analysis of Yersinia ruckeri strains under normal and iron-limited conditions
UniProt accession number | Ambiguous accession number | Protein | Function | SP-05 | CSF007-82 | 7959-11 | YRNC-10 |
|---|---|---|---|---|---|---|---|
Metabolic | |||||||
 C4UF95_YERRU | A0A085U4I3_YERRU | 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase | Glycolytic process | 3.8* | 3.6* | 3.2* | 3.1* |
 C4UMV0_YERRU | A0A085U9H2_YERRU | Succinate dehydrogenase iron-sulfur subunit | Glycolytic process/iron-sulfur cluster binding | −3.3* | −1.9 | −1.9 | −1.9 |
 C4UH25_YERRU | A0A0A8VEE9_YERRU | Phosphoenolpyruvate carboxykinase | Gluconeogenesis | −3.2* | 1.3 | −4.0 | −3.0 |
 C4UIX8_YERRU | A0A085U3P6_YERRU | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | Glycolytic process | −4.0* | −3.5* | −3.7* | −3.6* |
 C4UN43_YERRU | A0A085U407_YERRU | Fumarate hydratase class I, aerobic | Fumarate hydratase activity | −4.6* | −2.5 | −2.4 | −2.7 |
 A0A0A5FJV0_YERRU | A0A085U4U1_YERRU | Catalase | Peroxidase activity | −6.2* | −2.7 | −2.4 | −2.7 |
Amino acid biosynthesis | |||||||
 A0A0A8VHV7_YERRU | A0A085U7L2_YERRU | Aromatic-L-amino-acid decarboxylase | Amino acid metabolic process | 1.3 | 1.9 | 4.4* | 3.4* |
 C4UIX0_YERRU | A0A085U3N7_YERRU | Periplasmic protein CpxP | Protein misfolding | 4.4* | 1.8 | 2.6 | 1.9 |
 C4UM91_YERRU | A0A0A8VLE4_YERRU | Amino acid adenylation domain protein | Amino acid activation for nonribosomal peptide biosynthetic process | 1.1 | 2.0 | 3.9* | 2.4 |
 C4UL33_YERRU | A0A085UBI2_YERRU | FKBP-type 16 kDa peptidyl-prolyl cis–trans isomerase | Protein folding | −1.7 | −1.0 | 3.3 | 5.0* |
 A0A094STG7_YERRU | A0A085U807_YERRU | 50S ribosomal protein L35 | rRNA binding | −2.3 | −3.4 | −1.9 | −3.6* |
 C4UFW5_YERRU | A0A085U806_YERRU | 50S ribosomal protein L20 | rRNA binding | −4.1* | −1.9 | 1.0 | −1.6 |
Others | |||||||
 A0A094SMR6_YERRU | A0A085U3C8_YERRU | MbtH-like family protein | Nonribosomal peptide formation | 14.6 | 5.6* | 12.5 | 7.7 |
 C4UJX4_YERRU | A0A085U549_YERRU | Uncharacterized protein | Putative exported protein | 4.9* | 1.4 | 1.3 | 1.5 |
 A0A094SSK4_YERRU | A0A085UBK3_YERRU | Probable phosphoglycerate mutase GpmB | Phosphoglycerate mutase activity | −3.1* | −1.1 | −2.0 | −1.4 |
 C4UF96_YERRU | A0A085U4I2_YERRU | PsiF repeat protein | None predicted | −1.9 | −5.2* | −4.5 | −1.1 |
 C4UEV3_YERRU | A0A085U4A9_YERRU | Molybdopterin biosynthesis protein moeB | Molybdopterin cofactor biosynthetic process | 1.1 | −1.2 | −2.3 | −4.1* |
 C4UP53_YERRU | A0A085U2Q2_YERRU | Phosphopantetheine attachment site family protein | Phosphopantetheine binding | −1.8 | −1.2 | −1.7 | −3.2* |
 C4UJI8_YERRU | A0A0A8VHP1_YERRU | Peptidase S49 family protein | Serine-type endopeptidase activity | −1.0 | −2.3 | −2.9 | −4.1* |
 C4UFK9_YERRU | A0A085U7Q2_YERRU | Uncharacterized protein | Putative lipoprotein | −1.2 | 1.1 | −1.0 | 4.8* |