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Table 2 Differentially expressed proteins of Y. ruckeri strains (SP-05, CSF007-82, 7959-11 and YRNC-10)

From: Shotgun proteomic analysis of Yersinia ruckeri strains under normal and iron-limited conditions

UniProt accession number Ambiguous accession number Protein Function SP-05 CSF007-82 7959-11 YRNC-10
Siderophore
 C4UM82_YERRU A0A085U3B8_YERRU Enterobactin synthetase component B Siderophore biosynthesis 23.4* 18.7* 19.2* 10.5*
 C4UM84_YERRU A0A0A8VG89_YERRU Enterobactin synthetase component C Biosynthetic process 4.4* 5.2* 6.2* 4.8
 A0A0A8VLD7_YERRU A0A085U3B7_YERRU 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase of siderophore biosynthesis Siderophore biosynthesis 13.8* 19.2* 16.5* 22.7*
 C4UM94_YERRU A0A085U3D0_YERRU Ferrichrysobactin receptor Siderophore transport 11.2* 10.1* 14.4* 14.9*
 A0A0A8VMF7_YERRU A0A085U3B9_YERRU 2,3-dihydroxybenzoate-AMP ligase Siderophore biosynthesis 2.8 3.7 5.2* 3.9*
Copper
 C4UHL3_YERRU A0A0A8VB61_YERRU Copper-exporting P-type ATPase A Copper-exporting ATPase activity 3.8* 3.5* 2.8 2.3
 C4UI46_YERRU A0A085U353_YERRU Blue copper oxidase CueO Copper ion binding 2.2 3* 2.7 2.8
Oxidation reduction
 C4UGW6_YERRU A0A0A8VE22_YERRU Superoxide dismutase Mn Superoxide dismutase activity 4.6 5.6* 5.5* 3.5*
 C4UFR4_YERRU A0A085U7V3_YERRU Superoxide dismutase Fe Superoxide dismutase activity −28.6* −13.9* −14.3* −12.3*
 C4ULL1_YERRU A0A085U5T3_YERRU Glutaredoxin Electron carrier activity 16.6 3.5* 3.8* 7.4*
 C4UJD2_YERRU A0A085U8M0_YERRU NAD(P)H nitroreductase ydjA Oxidoreductase 2.5 3.2* 2.8 2.7
 C4UFI5_YERRU A0A085U7N0_YERRU NAD(P) transhydrogenase subunit beta NADP binding 2.1 3.4* 2.2 1.1
 C4UKC5_YERRU A0A085U882_YERRU FAD-binding 9 siderophore-interacting domain protein Oxidoreductase 4.2 8.6 5.7* 5.8*
 C4UNK9_YERRU A0A085U9C9_YERRU Peptide methionine sulfoxide reductase msrA Peptide-methionine (S)-S-oxide reductase activity −1.1 3.3 * 2.0 2.0
 C4UMV1_YERRU A0A085U9H1_YERRU Fumarate reductase flavoprotein subunit FAD binding −3.3* −2.5 −2.2 −2.0
 C4UKS8_YERRU A0A085U4P6_YERRU Molybdopterin guanine dinucleotide-containing S/N-oxide reductases family protein Molybdenum ion binding −4.3* −2.6 −2.4 −1.9
Flagella
 A0A094V4E9_YERRU A0A085U8W7_YERRU Flagellin Structural molecule activity 1.1 −4.2* 1.4 1.5
 A0A0A8VDU4_YERRU R4NIZ0_YERRU Flagellar biosynthesis protein FliC Structural molecule activity −1.1 −5.3* 1.3 −1.1
 C4UKI3_YERRU A0A085U8Z4_YERRU Flagellar L-ring family protein Motor activity −1.0 −2.7 −3.8 4.7*
 A0A094TLS7_YERRU A0A085U8Y5_YERRU Flagellar motor switch protein FliN Motor activity 1.1 −1.2 −3.6* 1.2
  1. Differentially expressed proteins details as in Table 1.