TY - JOUR AU - Harris, N. AU - Barletta, R. PY - 2001 DA - 2001// TI - Mycobacterium avium subsp. paratuberculosis in Veterinary Medicine JO - Clin Microbiol Rev VL - 14 UR - https://doi.org/10.1128/CMR.14.3.489-512.2001 DO - 10.1128/CMR.14.3.489-512.2001 ID - Harris2001 ER - TY - JOUR AU - Dye, C. AU - Williams, B. G. PY - 2010 DA - 2010// TI - The population dynamics and control of tuberculosis JO - Science VL - 328 UR - https://doi.org/10.1126/science.1185449 DO - 10.1126/science.1185449 ID - Dye2010 ER - TY - JOUR AU - Clarke, C. PY - 1997 DA - 1997// TI - The pathology and pathogenesis of paratuberculosis in ruminants and other species JO - J Comp Pathol VL - 116 UR - https://doi.org/10.1016/S0021-9975(97)80001-1 DO - 10.1016/S0021-9975(97)80001-1 ID - Clarke1997 ER - TY - JOUR AU - Gillan, S. AU - O’Brien, R. AU - Hughes, A. D. AU - Griffin, J. F. T. PY - 2010 DA - 2010// TI - Identification of immune parameters to differentiate disease states among sheep infected with Mycobacterium avium subsp. paratuberculosis JO - Clin Vaccine Immunol VL - 17 UR - https://doi.org/10.1128/CVI.00359-09 DO - 10.1128/CVI.00359-09 ID - Gillan2010 ER - TY - JOUR AU - Casanova, J. -. L. AU - Abel, L. PY - 2002 DA - 2002// TI - Genetic dissection of immunity to mycobacteria: the human model JO - Annu Rev Immunol VL - 20 UR - https://doi.org/10.1146/annurev.immunol.20.081501.125851 DO - 10.1146/annurev.immunol.20.081501.125851 ID - Casanova2002 ER - TY - JOUR AU - O’Garra, A. AU - Redford, P. S. AU - McNab, F. W. AU - Bloom, C. I. AU - Wilkinson, R. J. AU - Berry, M. P. R. PY - 2013 DA - 2013// TI - The immune response in tuberculosis JO - Annu Rev Immunol VL - 31 UR - https://doi.org/10.1146/annurev-immunol-032712-095939 DO - 10.1146/annurev-immunol-032712-095939 ID - O’Garra2013 ER - TY - JOUR AU - Smeed, J. A. AU - Watkins, C. A. AU - Rhind, S. M. AU - Hopkins, J. PY - 2007 DA - 2007// TI - Differential cytokine gene expression profiles in the three pathological forms of sheep paratuberculosis JO - BMC Vet Res VL - 3 UR - https://doi.org/10.1186/1746-6148-3-18 DO - 10.1186/1746-6148-3-18 ID - Smeed2007 ER - TY - JOUR AU - Whittington, R. J. AU - Begg, D. J. AU - Silva, K. AU - Plain, K. M. AU - Purdie, A. C. PY - 2012 DA - 2012// TI - Comparative immunological and microbiological aspects of paratuberculosis as a model mycobacterial infection JO - Vet Immunol Immunopathol VL - 148 UR - https://doi.org/10.1016/j.vetimm.2011.03.003 DO - 10.1016/j.vetimm.2011.03.003 ID - Whittington2012 ER - TY - JOUR AU - Burrells, C. AU - Clarke, C. J. AU - Colston, A. AU - Kay, J. A. AU - Porter, J. AU - Little, D. AU - Sharp, J. M. PY - 1998 DA - 1998// TI - A study of immunological responses of sheep clinically-affected with paratuberculosis (Johne’s disease): the relationship of blood, mesenteric lymph node and intestinal lymphocyte responses to gross and microscopic pathology JO - Vet Immunol Immunopathol VL - 66 UR - https://doi.org/10.1016/S0165-2427(98)00201-3 DO - 10.1016/S0165-2427(98)00201-3 ID - Burrells1998 ER - TY - JOUR AU - Allen, A. J. AU - Park, K. T. AU - Barrington, G. M. AU - Lahmers, K. K. AU - Abdellrazeq, G. S. AU - Rihan, H. M. AU - Sreevatsan, S. AU - Davies, C. AU - Hamilton, M. J. AU - Davis, W. C. PY - 2011 DA - 2011// TI - Experimental infection of a bovine model with human isolates of Mycobacterium avium subsp. paratuberculosis JO - Vet Immunol Immunopathol VL - 141 UR - https://doi.org/10.1016/j.vetimm.2011.03.014 DO - 10.1016/j.vetimm.2011.03.014 ID - Allen2011 ER - TY - JOUR AU - Begg, D. AU - Silva, K. AU - Carter, N. AU - Plain, K. AU - Purdie, A. AU - Whittington, R. PY - 2011 DA - 2011// TI - Does a Th1 over Th2 dominancy really exist in the early stages of Mycobacterium avium subspecies paratuberculosis infections? JO - Immunobiology VL - 216 UR - https://doi.org/10.1016/j.imbio.2010.12.004 DO - 10.1016/j.imbio.2010.12.004 ID - Begg2011 ER - TY - JOUR AU - Roussey, J. A. AU - Oliveira, L. J. AU - Langohr, I. M. AU - Sledge, D. G. AU - Coussens, P. M. PY - 2016 DA - 2016// TI - Regulatory T cells and immune profiling in Johne’s disease lesions JO - Vet Immunol Immunopathol VL - 16 ID - Roussey2016 ER - TY - JOUR AU - Roussey, J. A. AU - Steibel, J. AU - Coussens, P. M. PY - 2014 DA - 2014// TI - Regulatory T cell activity and signs of T cell unresponsiveness in bovine paratuberculosis JO - Front Vet Sci VL - 1 UR - https://doi.org/10.3389/fvets.2014.00020 DO - 10.3389/fvets.2014.00020 ID - Roussey2014 ER - TY - JOUR AU - Leite, F. L. AU - Eslabao, L. B. AU - Pesch, B. AU - Bannantine, J. P. AU - Reinhardt, T. A. AU - Stabel, J. R. PY - 2015 DA - 2015// TI - ZAP-70, CTLA-4 and proximal T cell receptor signaling in cows infected with Mycobacterium avium subsp. paratuberculosis JO - Vet Immunol Immunopathol VL - 167 UR - https://doi.org/10.1016/j.vetimm.2015.06.017 DO - 10.1016/j.vetimm.2015.06.017 ID - Leite2015 ER - TY - JOUR AU - Okagawa, T. AU - Konnai, S. AU - Nishimori, A. AU - Ikebuchi, R. AU - Mizorogi, S. AU - Nagata, R. AU - Kawaji, S. AU - Tanaka, S. AU - Kagawa, Y. AU - Murata, S. AU - Mori, Y. AU - Ohashi, K. PY - 2016 DA - 2016// TI - Bovine immunoinhibitory receptors contribute to suppression of Mycobacterium avium subsp. paratuberculosis-specific T-cell responses JO - Infect Immun VL - 84 UR - https://doi.org/10.1128/IAI.01014-15 DO - 10.1128/IAI.01014-15 ID - Okagawa2016 ER - TY - JOUR AU - Vosse, E. AU - Hoeve, M. A. AU - Ottenhoff, T. H. M. PY - 2004 DA - 2004// TI - Human genetics of intracellular infectious diseases: molecular and cellular immunity against mycobacteria and salmonellae JO - Lancet Infect Dis VL - 4 UR - https://doi.org/10.1016/S1473-3099(04)01203-4 DO - 10.1016/S1473-3099(04)01203-4 ID - Vosse2004 ER - TY - JOUR AU - Saini, C. AU - Ramesh, V. AU - Nath, I. PY - 2013 DA - 2013// TI - CD4+ Th17 cells discriminate clinical types and constitute a third subset of non Th1, Non Th2 T cells in human leprosy JO - PLoS Negl Trop Dis VL - 7 UR - https://doi.org/10.1371/journal.pntd.0002338 DO - 10.1371/journal.pntd.0002338 ID - Saini2013 ER - TY - JOUR AU - Zhu, J. AU - Yamane, H. AU - Paul, W. E. PY - 2010 DA - 2010// TI - Differentiation of effector CD4 T cell populations JO - Annu Rev Immunol VL - 28 UR - https://doi.org/10.1146/annurev-immunol-030409-101212 DO - 10.1146/annurev-immunol-030409-101212 ID - Zhu2010 ER - TY - JOUR AU - Hwang, E. S. AU - Szabo, S. J. AU - Schwartzberg, P. L. AU - Glimcher, L. H. PY - 2005 DA - 2005// TI - T helper cell fate specified by kinase-mediated interaction of T-bet with GATA-3 JO - Science VL - 307 UR - https://doi.org/10.1126/science.1103336 DO - 10.1126/science.1103336 ID - Hwang2005 ER - TY - JOUR AU - Zhu, J. F. AU - Yamane, H. AU - Cote-Sierra, J. AU - Guo, L. Y. AU - Paul, W. E. PY - 2006 DA - 2006// TI - GATA-3 promotes Th2 responses through three different mechanisms: induction of Th2 cytokine production, selective growth of Th2 cells and inhibition of Th1 cell-specific factors JO - Cell Res VL - 16 UR - https://doi.org/10.1038/sj.cr.7310002 DO - 10.1038/sj.cr.7310002 ID - Zhu2006 ER - TY - JOUR AU - Yang, X. O. AU - Pappu, B. P. AU - Nurieva, R. AU - Akimzhanov, A. AU - Kang, H. S. AU - Chung, Y. AU - Ma, L. AU - Shah, B. AU - Panopoulos, A. D. AU - Schluns, K. S. AU - Watowich, S. S. AU - Tian, Q. AU - Jetten, A. M. AU - Dong, C. PY - 2008 DA - 2008// TI - T helper 17 lineage differentiation is programmed by orphan nuclear receptors RORα and RORγ JO - Immunity VL - 28 UR - https://doi.org/10.1016/j.immuni.2007.11.016 DO - 10.1016/j.immuni.2007.11.016 ID - Yang2008 ER - TY - JOUR AU - Tait Wojno, E. D. AU - Artis, D. PY - 2012 DA - 2012// TI - Innate lymphoid cells: balancing immunity, inflammation, and tissue repair in the intestine JO - Cell Host Microbe VL - 12 UR - https://doi.org/10.1016/j.chom.2012.10.003 DO - 10.1016/j.chom.2012.10.003 ID - Tait Wojno2012 ER - TY - JOUR AU - Lazarevic, V. AU - Glimcher, L. H. PY - 2011 DA - 2011// TI - T-bet in disease JO - Nat Immunol VL - 12 UR - https://doi.org/10.1038/ni.2059 DO - 10.1038/ni.2059 ID - Lazarevic2011 ER - TY - JOUR AU - Ohtani, K. AU - Ohtsuka, Y. AU - Ikuse, T. AU - Baba, Y. AU - Yamakawa, Y. AU - Aoyagi, Y. AU - Fujii, T. AU - Kudo, T. AU - Nagata, S. AU - Shimizu, T. PY - 2010 DA - 2010// TI - Increased mucosal expression of GATA-3 and STAT-4 in pediatric ulcerative colitis JO - Pediatr Int VL - 52 UR - https://doi.org/10.1111/j.1442-200X.2009.03019.x DO - 10.1111/j.1442-200X.2009.03019.x ID - Ohtani2010 ER - TY - JOUR AU - Kanai, T. AU - Mikami, Y. AU - Sujino, T. AU - Hisamatsu, T. AU - Hibi, T. PY - 2012 DA - 2012// TI - RORγt-dependent IL-17A-producing cells in the pathogenesis of intestinal inflammation JO - Mucosal Immunol VL - 5 UR - https://doi.org/10.1038/mi.2012.6 DO - 10.1038/mi.2012.6 ID - Kanai2012 ER - TY - JOUR AU - Delerive, P. AU - Monte, D. AU - Dubois, G. AU - Trottein, F. AU - Fruchart-Najib, J. AU - Mariani, J. AU - Fruchart, J. C. AU - Staels, B. PY - 2001 DA - 2001// TI - The orphan nuclear receptor ROR alpha is a negative regulator of the inflammatory response JO - EMBO Rep VL - 2 UR - https://doi.org/10.1093/embo-reports/kve007 DO - 10.1093/embo-reports/kve007 ID - Delerive2001 ER - TY - JOUR AU - Black, D. L. PY - 2000 DA - 2000// TI - Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology JO - Cell VL - 103 UR - https://doi.org/10.1016/S0092-8674(00)00128-8 DO - 10.1016/S0092-8674(00)00128-8 ID - Black2000 ER - TY - JOUR AU - Pykalainen, M. AU - Kinos, R. AU - Valkonen, S. AU - Rydman, P. AU - Kilpelalainen, M. AU - Laitinen, L. A. AU - Karjalainen, J. AU - Nieminen, M. AU - Hurme, M. AU - Kere, J. AU - Laitinen, T. AU - Lahesmaa, R. PY - 2005 DA - 2005// TI - Association analysis of common variants of STAT6, GATA3, and STAT4 to asthma and high serum IgE phenotypes JO - J Allergy Clin Immunol VL - 115 UR - https://doi.org/10.1016/j.jaci.2004.10.006 DO - 10.1016/j.jaci.2004.10.006 ID - Pykalainen2005 ER - TY - JOUR AU - Rauen, T. AU - Juang, Y. T. AU - Hedrich, C. M. AU - Kis-Toth, K. AU - Tsokos, G. C. PY - 2012 DA - 2012// TI - A novel isoform of the orphan receptor RORγt suppresses IL-17 production in human T cells JO - Genes Immun VL - 13 UR - https://doi.org/10.1038/gene.2011.85 DO - 10.1038/gene.2011.85 ID - Rauen2012 ER - TY - JOUR AU - Giguère, V. AU - Tini, M. AU - Flock, G. AU - Ong, E. AU - Evans, R. M. AU - Otulakowski, G. PY - 1994 DA - 1994// TI - Isoform-specific amino-terminal domains dictate DNA-binding properties of ROR alpha, a novel family of orphan hormone nuclear receptors JO - Genes Dev VL - 8 UR - https://doi.org/10.1101/gad.8.5.538 DO - 10.1101/gad.8.5.538 ID - Giguère1994 ER - TY - JOUR AU - Wilkie, H. AU - Gossner, A. AU - Bishop, S. AU - Hopkins, J. PY - 2016 DA - 2016// TI - Variations in T cell transcription factor sequence and expression associated with resistance to the sheep nematode Teladorsagia circumcincta JO - PLoS One VL - 11 UR - https://doi.org/10.1371/journal.pone.0149644 DO - 10.1371/journal.pone.0149644 ID - Wilkie2016 ER - TY - JOUR AU - Eishi, Y. AU - Suga, M. AU - Ishige, I. AU - Kobayashi, D. AU - Yamada, T. AU - Takemura, T. AU - Takizawa, T. AU - Koike, M. AU - Kudoh, S. AU - Costabel, U. AU - Guzman, J. AU - Rizzato, G. AU - Gambacorta, M. AU - Bois, R. AU - Nicholson, A. G. AU - Sharma, O. P. AU - Ando, M. PY - 2002 DA - 2002// TI - Quantitative analysis of mycobacterial and propionibacterial DNA in lymph nodes of Japanese and European patients with sarcoidosis JO - J Clin Microbiol VL - 40 UR - https://doi.org/10.1128/JCM.40.1.198-204.2002 DO - 10.1128/JCM.40.1.198-204.2002 ID - Eishi2002 ER - TY - JOUR AU - Bauerfeind, R. AU - Benazzi, S. AU - Weiss, R. AU - Schliesser, T. AU - Willems, H. AU - Baljer, G. PY - 1996 DA - 1996// TI - Molecular characterization of Mycobacterium paratuberculosis isolates from sheep, goats, and cattle by hybridization with a DNA probe to insertion element IS900 JO - J Clin Microbiol VL - 34 ID - Bauerfeind1996 ER - TY - JOUR AU - Gossner, A. G. AU - Venturina, V. M. AU - Peers, A. AU - Watkins, C. A. AU - Hopkins, J. PY - 2012 DA - 2012// TI - Expression of sheep interleukin 23 (IL23A, alpha subunit p19) in two distinct gastrointestinal diseases JO - Vet Immunol Immunopathol VL - 150 UR - https://doi.org/10.1016/j.vetimm.2012.08.004 DO - 10.1016/j.vetimm.2012.08.004 ID - Gossner2012 ER - TY - JOUR AU - Nicol, L. AU - Gossner, A. AU - Watkins, C. AU - Chianini, F. AU - Dalziel, R. AU - Hopkins, J. PY - 2016 DA - 2016// TI - Variations in IL-23 and IL-25 receptor gene structure, sequence and expression associated with the two disease forms of sheep paratuberculosis JO - Vet Res VL - 47 UR - https://doi.org/10.1186/s13567-016-0314-4 DO - 10.1186/s13567-016-0314-4 ID - Nicol2016 ER - TY - JOUR AU - Robinson, M. W. AU - O’Brien, R. AU - Mackintosh, C. G. AU - Clark, R. G. AU - Griffin, J. F. T. PY - 2011 DA - 2011// TI - Immunoregulatory cytokines are associated with protection from immunopathology following Mycobacterium avium subspecies paratuberculosis infection in red deer JO - Infect Immun VL - 79 UR - https://doi.org/10.1128/IAI.00779-10 DO - 10.1128/IAI.00779-10 ID - Robinson2011 ER - TY - JOUR AU - Begg, D. J. AU - O’Brien, R. AU - Mackintosh, C. G. AU - Griffin, J. T. PY - 2005 DA - 2005// TI - Experimental infection model for Johne’s disease in sheep JO - Infect Immun VL - 73 UR - https://doi.org/10.1128/IAI.73.9.5603-5611.2005 DO - 10.1128/IAI.73.9.5603-5611.2005 ID - Begg2005 ER - TY - JOUR AU - Matsuoka, K. AU - Inoue, N. AU - Sato, T. AU - Okamoto, S. AU - Hisamatsu, T. AU - Kishi, Y. AU - Sakuraba, A. AU - Hitotsumatsu, O. AU - Ogata, H. AU - Koganei, K. AU - Fukushima, T. AU - Kanai, T. AU - Watanabe, M. AU - Ishii, H. AU - Hibi, T. PY - 2004 DA - 2004// TI - T-bet upregulation and subsequent interleukin 12 stimulation are essential for induction of Th1 mediated immunopathology in Crohn’s disease JO - Gut VL - 53 UR - https://doi.org/10.1136/gut.2003.024190 DO - 10.1136/gut.2003.024190 ID - Matsuoka2004 ER - TY - JOUR AU - Sanchez, D. AU - Lefebvre, C. AU - Garcia, L. F. AU - Barrera, L. F. PY - 2013 DA - 2013// TI - Variants in the IFNg transcription factor genes TBET, STAT1, STAT4, and HLX and the risk of pulmonary tuberculosis in a Colombian population: a case-control study JO - Biomedica VL - 33 ID - Sanchez2013 ER - TY - JOUR AU - Coussens, P. M. AU - Verman, N. AU - Coussens, M. A. AU - Elftman, M. D. AU - McNulty, A. M. PY - 2004 DA - 2004// TI - Cytokine gene expression in peripheral blood mononuclear cells and tissues of cattle infected with Mycobacterium avium subsp. paratuberculosis: evidence for an inherent proinflammatory gene expression pattern JO - Infect Immun VL - 72 UR - https://doi.org/10.1128/IAI.72.3.1409-1422.2004 DO - 10.1128/IAI.72.3.1409-1422.2004 ID - Coussens2004 ER - TY - JOUR AU - Ho, I. C. AU - Tai, T. -. S. AU - Pai, S. -. Y. PY - 2009 DA - 2009// TI - GATA3 and the T-cell lineage: essential functions before and after T-helper-2-cell differentiation JO - Nat Rev Immunol VL - 9 UR - https://doi.org/10.1038/nri2476 DO - 10.1038/nri2476 ID - Ho2009 ER - TY - JOUR AU - Yagi, R. AU - Zhu, J. AU - Paul, W. E. PY - 2011 DA - 2011// TI - An updated view on transcription factor GATA3-mediated regulation of Th1 and Th2 cell differentiation JO - Int Immunol VL - 23 UR - https://doi.org/10.1093/intimm/dxr029 DO - 10.1093/intimm/dxr029 ID - Yagi2011 ER - TY - JOUR AU - Shinnakasu, R. AU - Yamashita, M. AU - Shinoda, K. AU - Endo, Y. AU - Hosokawa, H. AU - Hasegawa, A. AU - Ikemizu, S. AU - Nakayama, T. PY - 2006 DA - 2006// TI - Critical YxKxHxxxRP motif in the C-terminal region of GATA3 for its DNA binding and function JO - J Immunol VL - 177 UR - https://doi.org/10.4049/jimmunol.177.9.5801 DO - 10.4049/jimmunol.177.9.5801 ID - Shinnakasu2006 ER - TY - JOUR AU - Korn, T. AU - Bettelli, E. AU - Oukka, M. AU - Kuchroo, V. K. PY - 2009 DA - 2009// TI - IL-17 and Th17 Cells JO - Annu Rev Immunol VL - 27 UR - https://doi.org/10.1146/annurev.immunol.021908.132710 DO - 10.1146/annurev.immunol.021908.132710 ID - Korn2009 ER - TY - JOUR AU - Medvedev, A. AU - Chistokhina, A. AU - Hirose, T. AU - Jetten, A. M. PY - 1997 DA - 1997// TI - Genomic structure and chromosomal mapping of the nuclear orphan receptor ROR gamma (RORC) gene JO - Genomics VL - 46 UR - https://doi.org/10.1006/geno.1997.4980 DO - 10.1006/geno.1997.4980 ID - Medvedev1997 ER - TY - JOUR AU - Dennis, M. M. AU - Reddacliff, L. A. AU - Whittington, R. J. PY - 2011 DA - 2011// TI - Longitudinal study of clinicopathological features of Johne’s disease in sheep naturally exposed to Mycobacterium avium subspecies paratuberculosis JO - Vet Pathol VL - 48 UR - https://doi.org/10.1177/0300985810375049 DO - 10.1177/0300985810375049 ID - Dennis2011 ER -