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Table 3 ChISGs identified by RNA-seq using Baggerly’s test but not Kal’s test using standard criteria (FC > 3 or FDR < 0.01)

From: Chicken interferome: avian interferon-stimulated genes identified by microarray and RNA-seq of primary chick embryo fibroblasts treated with a chicken type I interferon (IFN-α)

Feature ID Baggerley’s weighted proportions FC Baggerley’s FDR p value correction Kal’s relaxed FDR < 0.05a
FAM26F 148 0.0000 Yes
THEMIS2 118 0.0004  
ENSGALG00000026152 55 0.0000  
ENSGALG00000005148 54 0.0043  
ENSGALG00000003110 52 0.0050  
IL4I1 26 0.0040  
C1orf168 24 0.0001  
SPIRE2 18 0.0041  
HRH1 17 0.0001  
AZIN2 14 0.0000  
ENSGALG00000029181 14 0.0000  
ENSGALG00000001629 12 0.0001  
B3GNT4 9 0.0000  
GDPD4 8 0.0000  
ATP6V1G3 7 0.0002  
DUSP15 7 0.0002  
IKBKE 7 0.0001  
ANGPTL7 6 0.0000  
ARHGEF28 6 0.0004  
KCNJ5 6 0.0000  
CHRD 5 0.0000 Yes
ENSGALG00000002823 5 0.0005  
ENSGALG00000004772 5 0.0000  
ENSGALG00000006325 5 0.0000  
ENSGALG00000027955 5 0.0000  
FUT10 5 0.0000  
TOR4A 5 0.0001  
C1QTNF1 4 0.0000  
CYBRD1 4 0.0000  
ENSGALG00000000819 4 0.0028  
ENSGALG00000020899 4 0.0000  
ISLR 4 0.0000  
JAM2 4 0.0000  
KIAA0226 4 0.0028  
MALL 4 0.0002  
MAOA 4 0.0000  
RBM43 4 0.0015  
  1. aChISGs significant by Kal’s Z test under relaxed criteria (FDR < 0.05).