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Table 2 Matrix showing significant hits from microarray (Affymetrix 32K GeneChip Chicken Genome Array) analysis of chicken embryo fibroblasts (CEF) treated with recombinant chicken IFN1 (1000 units, 6 h)

From: Chicken interferome: avian interferon-stimulated genes identified by microarray and RNA-seq of primary chick embryo fibroblasts treated with a chicken type I interferon (IFN-α)

Fold change FDR
All <0.05 <0.02 <0.01 <0.005 <0.001
All 38 285 945 414 250 150 24
>1.1 17 636 942 414 250 150 24
>1.5 1965 676 363 232 146 23
>2.0 677 458 296 206 135 22
>3.0 354 306 235 181 123 22
Expected by chance   47 8 2 0 0
  1. Numbers of significant genes are indicated for fold change in expression from >1.1 to >3 and from false discovery rate (FDR) <0.001 to <0.05 (unpaired T test with asymptotic p value computation and Benjamini–Hochberg multiple testing correction).